PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK28368.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family Dof
Protein Properties Length: 229aa    MW: 24013.6 Da    PI: 9.5769
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK28368.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1208.8e-382989262
      zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                ++++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGg +rk+ k+s
  KFK28368.1 29 QQEQLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGVSRKSSKRS 89
                57899***************************************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-32278IPR003851Zinc finger, Dof-type
PfamPF027015.3E-333187IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.773387IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103571IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MPSEFNEPRR ILTRPHGGGT VAIAVPADQQ EQLPCPRCDS TNTKFCYYNN YNFSQPRHFC  60
KSCRRYWTHG GTLRDIPVGG VSRKSSKRSK TYSSSAAAST VVGSRSFPLQ ATPVLFPPSS  120
NGGVNTAAKG SASSLYGGFT SLLNYNAAVS RNGSGGGFHG PDGFGLGLGH GSYFDGVRFG  180
QGGVTVWPFS TGATDAAAAA TSHVAPLPAT WQFEGPEGKV GFVSGDYVA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00593DAPTransfer from AT5G66940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK28368.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393893.11e-131dof zinc finger protein DOF5.8
SwissprotQ9FGD61e-121DOF58_ARATH; Dof zinc finger protein DOF5.8
TrEMBLA0A087GER61e-166A0A087GER6_ARAAL; Uncharacterized protein
STRINGA0A087GER61e-167(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22862874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66940.13e-88Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]