PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK28429.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family LBD
Protein Properties Length: 241aa    MW: 26195.5 Da    PI: 8.21
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK28429.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.48.5e-322103197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Ga+g++++++++l+q+++e+
  KFK28429.1   2 SCNGCRVLRKGCSENCILRPCIqwietADAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAIGMLWTGNWNLCQAAVET 100
                 6*********************9998666789****************************************************************999 PP

      DUF260  95 all 97 
                 +l+
  KFK28429.1 101 VLR 103
                 876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.5721107IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-262101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPESQR  60
PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNLCQAAVET VLRGGSLRPI PEISGGGFAG  120
FPSAKSEEAS EICTEMLNNN STDRNIYHHS RFSSSRSRST RDSSSPTKRK RVASEQTELD  180
LSLINNLPVK STPRRRSVTP SMNSEESTTT TSFWDNTATG ELYGNGGGVV GEESKLLNLF  240
V
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK28429.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738721e-140AB473872.1 Arabidopsis thaliana ASL39 mRNA for ASYMMETRIC LEAVES2-like 39 protein, complete cds.
GenBankAF4478941e-140AF447894.1 Arabidopsis thaliana LOB DOMAIN 37 (LBD37) mRNA, complete cds.
GenBankBT0244771e-140BT024477.1 Arabidopsis thaliana At5g67420 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871220.11e-132LOB domain-containing protein 37
SwissprotQ9FN111e-129LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A087GEX71e-177A0A087GEX7_ARAAL; Uncharacterized protein
STRINGA0A087GEX71e-178(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-113LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]