PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK28431.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 234aa    MW: 25189.5 Da    PI: 7.5621
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK28431.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-0591113123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ykC+ CgksFs+   L  H  +H
  KFK28431.1  91 YKCTVCGKSFSSYQALGGHKTSH 113
                 9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.0E-1090113No hitNo description
SMARTSM003550.002891113IPR015880Zinc finger, C2H2-like
PfamPF139128.6E-1491115IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-591113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.36591118IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SuperFamilySSF576675.0E-10150177No hitNo description
SMARTSM003550.82155177IPR015880Zinc finger, C2H2-like
PfamPF139125.5E-11155179IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349155177IPR007087Zinc finger, C2H2
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MALETLNSPT STTVTARPLL RYREEMEPEN LEQWAKRKRT KRQRFDHNQE TNTNTEEEYL  60
ALCLLMLARG SSAVQPPLPP SRPSPSDHRD YKCTVCGKSF SSYQALGGHK TSHRKPTTTP  120
GNHPEPSSNS NGGSVVINGN GNNTNGGVSQ SGKIHTCSIC FKSFSSGQAL GGHKRCHYDG  180
GNNNGNGSNS NSVEVVAGSD VSDVDDERSS EQSGVGHRGF DLNLPADQVS VTVS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00118ampDAPTransfer from AT5G67450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK28431.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393949.11e-116zinc finger protein AZF1
SwissprotQ9SSW11e-113AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A087GEX91e-173A0A087GEX9_ARAAL; Uncharacterized protein
STRINGA0A087GEX91e-174(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.13e-81zinc-finger protein 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]