PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK28467.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 191aa    MW: 20488.3 Da    PI: 4.8203
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK28467.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-053153123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C + F++   L  H+++H
  KFK28467.1 31 YTCNFCRREFRSAQALGGHMNVH 53
                9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.14E-62857No hitNo description
Gene3DG3DSA:3.30.160.608.2E-42955IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1983158IPR007087Zinc finger, C2H2
PfamPF139121.9E-53154IPR007087Zinc finger, C2H2
SMARTSM003550.00733153IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDDDDESWEV KAFEQDTKGN ISGTTWPPRS YTCNFCRREF RSAQALGGHM NVHRRDRASS  60
RAHQGSVAAA ARGGGGDGRG GGGSTFLNSC VPPTLIIQST ASNIEGLSHF YQLQNPNGIF  120
GNSGDMMNLY GTTSFPSNNL AFSMLNSPVE APPRLIEYST GDDESNGSVK ETTGASVDEL  180
DLELRLGHNP P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-132653229superman protein
2l1o_A1e-132653229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK28467.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870083.11e-117transcriptional regulator SUPERMAN
TrEMBLA0A087GF151e-140A0A087GF15_ARAAL; Uncharacterized protein
STRINGA0A087GF151e-140(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-113C2H2 family protein