PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK28692.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 185aa    MW: 21276.2 Da    PI: 8.4853
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK28692.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.1e-111663555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 + +E++RR +++s ++eL +llP++   + + l+  + L +A +YIk Lq
  KFK28692.1 16 RKTVEKNRRIQMKSLYSELNSLLPQP---SRELLTLPDQLDEAANYIKRLQ 63
                6789**********************...7777*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.13E-9574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.46E-5967No hitNo description
PROSITE profilePS5088810.8741162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-81676IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-71763IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00331768IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MDQSHSNTSQ SRSTDRKTVE KNRRIQMKSL YSELNSLLPQ PSRELLTLPD QLDEAANYIK  60
RLQVNVEKKR ERKRKLIATT CFEKSNSAGS SSVNVIAPKR VPKIEIQETG SILHIFLVTS  120
LEHKFMFSEI IRLLTEELEA EITHAGYSTV DDAVFHTLHC KVEECDHGSR SRIYERLEKF  180
VNSVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16675EKKRERKRKL
26875KRERKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK28692.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936861e-117AB493686.1 Arabidopsis thaliana At4g20970 mRNA for hypothetical protein, partial cds, clone: RAAt4g20970.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413836.11e-102transcription factor bHLH162
SwissprotF4JIJ72e-94BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A087GFP01e-133A0A087GFP0_ARAAL; Uncharacterized protein
STRINGA0A087GFP01e-134(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-89bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]