PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK28739.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 745aa    MW: 82827.4 Da    PI: 7.6385
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK28739.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.58.9e-17320415197
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 f+k l+ sd+ k+grlv+pk++ae++  + +  +++ l+++d+ gr+W++++ + ++ ++yvl  G     ++ ++++gD+v+Fk+ +  e++l + ++
  KFK28739.1 320 FEKMLSASDTRKQGRLVVPKQYAEAYfpQVSDLKGVPLKVQDSMGREWTFRY-HLNNTRTYVLD-GVAACLQSMQVQAGDTVIFKRLD-PERKLIMDFR 415
                 89************************99555557888***************.56666789998.********************665.6666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-23318423IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-16319416IPR015300DNA-binding pseudobarrel domain
CDDcd100171.83E-16319416No hitNo description
PROSITE profilePS5086310.884320418IPR003340B3 DNA binding domain
PfamPF023623.7E-14320416IPR003340B3 DNA binding domain
SMARTSM010195.0E-12320418IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MSSSSRFCLN RECSQSHFKV DHYRSGWPLR TGDFADLCHR CASAYEQGKF CDIFHPRASG  60
WRCCESCGKR IHCGCIVSAS AFILLDAGGI ECLACTRKKV PLGPSFAPPQ SYFLQSPVAE  120
KFRNLTNHIS CQPPSLLSPS ALQLDLLNLG DRYGFSQPTS HDRGMTDLMG KLMSEKLKNH  180
TIDILNNQKA GPNRNVPPCP NVNVYHPLIS LKEGPFGTQI ACPAPNTTPI VTTGHSRLDG  240
SNLIFPTAHT PKFSSLSRLP NDLNGGADST FEKKSWNLGT HFDTPGKYQV VPQYWPKGSN  300
NSQDQQNASK ESNFVVTTLF EKMLSASDTR KQGRLVVPKQ YAEAYFPQVS DLKGVPLKVQ  360
DSMGREWTFR YHLNNTRTYV LDGVAACLQS MQVQAGDTVI FKRLDPERKL IMDFRKASVA  420
QSSDQEIDSV NNISDTCTNE DTEPVDTQSP SKFKKSAKRT KESRSKKKNS NTIITRSKRQ  480
KVEKGDLIEL KLTCKEAQGL LLPPPNFTPS IVTIEDTEFE EYEDAPIIGK PTVCTSDGGG  540
STCSEDEELI AEQHDEEAME ETEEHLMSPT ATTKHPRHKL GCACIVCLQS PSGFGPKHVQ  600
GCCCMVCEMM KRRRRSLLLY NEKKQIDKAE NAKKMLESLN FDEELHQCAN KSGNTSKNHT  660
SHLKGQIDLN LQPEKDEESM PGAYTTTKNK SVNHDEIVKS SFKPPSSSSP YSHIDKEDTG  720
KLNSETADTN TSSSYPRLVV LLQGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-363034207127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in plant development. {ECO:0000269|PubMed:17158584}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK28739.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005764.10.0LOW QUALITY PROTEIN: B3 domain-containing transcription factor VAL3
SwissprotO654200.0VAL3_ARATH; B3 domain-containing transcription factor VAL3
TrEMBLA0A087GFT70.0A0A087GFT7_ARAAL; Uncharacterized protein
STRINGA0A087GFT70.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.10.0VP1/ABI3-like 3