PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK28984.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family WRKY
Protein Properties Length: 298aa    MW: 33455.9 Da    PI: 10.2519
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK28984.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.5e-31229287259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +d  ++++tYeg+Hnh 
  KFK28984.1 229 SDEYSWRKYGQKPIKGSPHPRGYYKCSTVrGCPARKHVERALDDHMMLIVTYEGDHNHA 287
                 69************************9888****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.2E-14194226IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.9E-33215287IPR003657WRKY domain
PROSITE profilePS5081130.469223289IPR003657WRKY domain
SuperFamilySSF1182903.14E-26226287IPR003657WRKY domain
SMARTSM007748.0E-37228288IPR003657WRKY domain
PfamPF031063.0E-26230286IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MELMISYDGR IKEEDGFPVI AAVKTEDMAL REAASAGIHG VEEFLKLIGQ SQTTENQTEI  60
TTVTDVTVNN FKKVISLLGR CTNGHARFRR GPFKQTETAE EKKKKTEPSV LFRRHQTEQY  120
SGSAFRVYCP TPIHRRPPLS QNSIKNQNQT KNGSSSSPLQ ELSARGDTDS SYQTSSQVSG  180
KPPLSSVSLK RRCHSSSSSR CHCSKKRKSK VKRVTRVPAV SSKMADIPSD EYSWRKYGQK  240
PIKGSPHPRG YYKCSTVRGC PARKHVERAL DDHMMLIVTY EGDHNHALLL ETHPHKTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-21215288173WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189207KRRCHSSSSSRCHCSKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK28984.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3841127e-81FJ384112.1 Brassica napus cultivar Westar WRKY transcription factor 7 (WRKY7) mRNA, WRKY7-2 allele, complete cds.
GenBankKM5931547e-81KM593154.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY79) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869730.11e-137probable WRKY transcription factor 7
SwissprotQ9STX01e-135WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A087GGI20.0A0A087GGI2_ARAAL; Uncharacterized protein
STRINGA0A087GGI20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-103WRKY DNA-binding protein 7