PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK29030.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GeBP
Protein Properties Length: 369aa    MW: 41567.6 Da    PI: 10.3414
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK29030.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573101.47.6e-32135233297
      DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifelskkiW 96 
                 +fqrl+se+Dei+lLqG++df+ak+g ++++++daf+++vkk i+f++++sql +Ki+rL+kKf + vk+     k+++e++fsk+ dqk+fels++iW
  KFK29030.1 135 MFQRLFSESDEIALLQGILDFNAKKG-DYHKEMDAFVDYVKKLINFNANRSQLKTKIQRLRKKFANIVKNslkkGKNEDEIVFSKDLDQKAFELSRQIW 232
                 69************************.99************************************9998887778999********************* PP

      DUF573  97 g 97 
                 g
  KFK29030.1 233 G 233
                 8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.0E-26136233IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MSLVHLKNNL SLLVKFPRKT ILLMTKTSPN PLRQVLLFLS LPKSSNLTLN QNPTLNPSXX  60
XXLEPDSESE SESESDSEPI QNLTSGSITT KSTLPESSTS KRKETEDVLD VQKNKKMKTG  120
DGEVKKISGD EAKLMFQRLF SESDEIALLQ GILDFNAKKG DYHKEMDAFV DYVKKLINFN  180
ANRSQLKTKI QRLRKKFANI VKNSLKKGKN EDEIVFSKDL DQKAFELSRQ IWGNNGVQVS  240
KSRKKKHEEE TPREFKLVPH SSKKRQETVK AAEAKDTGLE LSSFFKTENV TAFSLDESAL  300
SAVWGTVKDG SKKREMEERL KKLKAKQGVL CMQRTGLVAD SAKLIFKDKA SSSSVKKVHH  360
VDCTVKGQN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK29030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869685.13e-90GLABROUS1 enhancer-binding protein-like isoform X1
SwissprotQ9SB424e-89STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBLA0A087GGM80.0A0A087GGM8_ARAAL; Uncharacterized protein
STRINGA0A087GGM80.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.11e-80DNA-binding storekeeper protein-related transcriptional regulator