PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK29074.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 411aa    MW: 44903.1 Da    PI: 9.6585
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK29074.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015162184223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  Cp Cg++F   ++L+ H+ + H
  KFK29074.1 162 ACPQCGEVFHKLESLEIHQAVrH 184
                 6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280161184IPR007087Zinc finger, C2H2
PROSITE profilePS501578.704161189IPR007087Zinc finger, C2H2
SuperFamilySSF563991.53E-22186407No hitNo description
Gene3DG3DSA:3.90.228.105.7E-14189408IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MRLSSNPKKK NKKKKTPPPP HMQKTISSSS SWSQIKNLLS CKQIEGPRVH DPSKITAQGP  60
YTSSALCGSS LCRFSDAIYG NARVIHRSDH SPESSNLGQD AGLLTRKPVT RGSVSTVRSN  120
GCGAYTSYSS SKAMHFSKLS GCYECHMIVD PSRYPISPRI CACPQCGEVF HKLESLEIHQ  180
AVRHAVSELG PEDSGRNIVD IIFKSSWLRK DSPSYNIERI LKVHNTQRTI QRFEDCRDAV  240
KSRALASTRK EPRSAADGNE LLRFHCTTVS CSLGSRGSTS LCSAIPGCRV CTIIRHGFHA  300
KTVRLGNVNA EACGGPKETK GVKTTASSGR AHDASRCFDQ RRAMLVCRVI AGRVRRMQSD  360
APHPNEEECG SGSYDSVAGA AGVYTNLDDL VVFNPRAILP CFVVIYKVSE S
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK29074.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288790.0AK228879.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-20-B08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393516.10.0uncharacterized protein LOC18010701
TrEMBLA0A087GGS20.0A0A087GGS2_ARAAL; Uncharacterized protein
STRINGA0A087GGS20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-160C2H2-like zinc finger protein