PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK29081.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family Dof
Protein Properties Length: 192aa    MW: 20572.8 Da    PI: 7.8349
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK29081.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1177.7e-372481461
      zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                + l+cprC+stntkfCyynny+l+qPry+Ck+CrryWt+GG+lr+vPvGgg+r+n ++
  KFK29081.1 24 EPLPCPRCNSTNTKFCYYNNYNLAQPRYYCKSCRRYWTHGGSLRDVPVGGGTRRNSSK 81
                6789**************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.9E-322580IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7422680IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102864IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-213078IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MPSEMGLTRP ARLQAAYPPP NLAEPLPCPR CNSTNTKFCY YNNYNLAQPR YYCKSCRRYW  60
THGGSLRDVP VGGGTRRNSS KRHRSPTATA SSSASVVTTT NQSEVTATTE TKGSDVISGN  120
GNESFESLFG GQNEGGTFLA LGSGTGVGLN YGFGFGYGLE EMSIPVSDTW KVGEMEGKGG  180
DSLIWPGLEI SM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00189DAPTransfer from AT1G47655Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK29081.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0889469e-67AY088946.1 Arabidopsis thaliana clone 103581 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590549.11e-77PREDICTED: dof zinc finger protein DOF1.6
SwissprotQ9SX973e-61DOF16_ARATH; Dof zinc finger protein DOF1.6
TrEMBLA0A087GGS91e-139A0A087GGS9_ARAAL; Uncharacterized protein
STRINGA0A087GGS91e-140(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47655.12e-39Dof family protein