PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK29397.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 343aa    MW: 39666.2 Da    PI: 6.4342
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK29397.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.95e-50101511129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                 lppGfrFhP+deelv++yL++k+++k+          +          + e+d++ +ePw+Lp  +k + kewyfFs rd+kyatg r+nrat sgyWk
  KFK29397.1  10 LPPGFRFHPSDEELVCHYLCNKIRAKSdhgdveD---DddealkgatDLVEIDLHICEPWQLPDVAKLNAKEWYFFSFRDRKYATGYRTNRATISGYWK 105
                 79***********************997665540...1456666664699*************87788999**************************** PP

         NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                 atgkd++v++  +++lvg++ktLvfy++rap+g kt+W+mhe+rle
  KFK29397.1 106 ATGKDRTVMDPrTRQLVGMRKTLVFYRNRAPNGIKTTWIMHEFRLE 151
                 **********967778***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-568169IPR003441NAC domain
PROSITE profilePS5100553.73310169IPR003441NAC domain
PfamPF023651.2E-2611150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGLKDIGSKL PPGFRFHPSD EELVCHYLCN KIRAKSDHGD VEDDDDEALK GATDLVEIDL  60
HICEPWQLPD VAKLNAKEWY FFSFRDRKYA TGYRTNRATI SGYWKATGKD RTVMDPRTRQ  120
LVGMRKTLVF YRNRAPNGIK TTWIMHEFRL ECPNMPPKED WVLCRVFNKG RDSSQQDNNN  180
DHETQKFEIN DAHNYNNQLA PILSSPPQHH HEKMKIQVCD QWEQLMKQPS RTTDHPYHHH  240
CHHQTVACGW DQMIGSVSSS SSHGPDHESL LNLLYVDNNN SVHITDDHLD QNYEHILLSS  300
DMTSLEHEKT RMRSSSSDGG MVSDIHMECG GLSFQTDNLL PFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-451016915168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK29397.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0024620.0BT002462.1 Arabidopsis thaliana NAM / CUC2 -like protein (At4g28530) mRNA, complete cds.
GenBankBT0087410.0BT008741.1 Arabidopsis thaliana At4g28530 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438442.10.0PREDICTED: NAC domain-containing protein 21/22-like
TrEMBLA0A087GHP50.0A0A087GHP5_ARAAL; Uncharacterized protein
STRINGA0A087GHP50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.10.0NAC domain containing protein 74