PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK29420.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 236aa    MW: 26766.7 Da    PI: 9.0334
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK29420.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376e-1256104355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++hn  E+rRR++i++ +  ++el+ ++    + K +Ka++L  A++Y+ksLq
  KFK29420.1  56 KMHNLYEQRRREKIKEMMKAIQELIIPP----CNKSNKASMLDDAIHYMKSLQ 104
                 57************************97....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.24E-1651118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.42153103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-956104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.19E-1156108No hitNo description
Gene3DG3DSA:4.10.280.102.1E-1657117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-1059109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVRVLPTFVV PSLGRKEKAV VSETTEPVME TADPKEREET EEARGSMSRK RSRIAKMHNL  60
YEQRRREKIK EMMKAIQELI IPPCNKSNKA SMLDDAIHYM KSLQMHLQMM STRGNMMPAT  120
YAPDMQQFMA HMAMGMNRPP FIPYRGTPPF PSQAHMAGVC PPYPFPAHGP SRIHIPTSQQ  180
PDPVSNQPQF SGYLNPYTQF AGIQQMQQPP PLQNQTISQP SLNQASSSEV PEDQEN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK29420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129259.13e-77PREDICTED: putative transcription factor bHLH056
SwissprotQ9SVU71e-63BH056_ARATH; Putative transcription factor bHLH056
TrEMBLA0A087GHR81e-173A0A087GHR8_ARAAL; Uncharacterized protein
STRINGA0A087GHR81e-174(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.14e-66bHLH family protein