PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK29648.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family M-type_MADS
Protein Properties Length: 341aa    MW: 39173.3 Da    PI: 7.1427
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK29648.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.64.9e-161051243
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                +i n+s r+ tf kR++g++KK +EL +LC++ ++ +i+s+ 
  KFK29648.1 10 FIANDSSRKATFKKRKKGLMKKVNELATLCGITACAVIYSPY 51
                899*************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.54149IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-23185IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-23160IPR002100Transcription factor, MADS-box
CDDcd002661.56E-20285No hitNo description
PRINTSPR004046.9E-8323IPR002100Transcription factor, MADS-box
PfamPF003192.9E-171051IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MTRKKVKLAF IANDSSRKAT FKKRKKGLMK KVNELATLCG ITACAVIYSP YDTNPEVWPS  60
NAGVQRVINE LRTLPEMDQH KKMVDQETFL RQRIAKATEH LKRQRKDNRE IEMTQVMYHC  120
MTGEIGEFHL NIMDLNDLGY LIDQFLKDIH RRMEIMQDFG IEIGESSHAA HGDDEVATKG  180
VGTITVVAAT SAPTAMVVSE ANFSSSSAAY FNSSQQHHYQ PPSQPQPPQP QPQQFHYLPA  240
PHVGYYEPQL RNWNMSQIQN HTQQQWLMEM MNRHPEQLSY IAEQMGLTVI DENQQYHLYH  300
QSLQQQQILD DSFIAPTAVS NSIIPAASNR YNHHYQPQPQ P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFIANDSSRKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK29648.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466902.11e-111PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-102AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A087GIE60.0A0A087GIE6_ARAAL; Uncharacterized protein
STRINGA0A087GIE60.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-99AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]