PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK29747.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 511aa    MW: 58029.5 Da    PI: 6.9381
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK29747.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.14.8e-1126912099
                HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 20 kkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 +f++++ ++      l  +d+s r W+v+l  ++ +    l++GW+ F+ +n+ ++gD++vF++dg+++   +v+v ++
  KFK29747.1 26 DEFLRNYTKV------LLRTDTSERFWKVYL--DGDR----LAGGWEVFAGDNKFRDGDVLVFRHDGDEN--IHVSVSSR 91
                5555555422......33367999*******..9998....***********************887554..58888776 PP
2B364.61.5e-20152248199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f+++ ++ ++l ++rl l+++ + + g+  ++  ++ l +++gr+W++ +  + +sg +++++GW++F++ ngLk+gD + Fkl++ +++++v+ ++++
  KFK29747.1 152 FVTAHVTRYSLHKDRLDLSRNLTVSLGEH-NKAHEIDLVNKQGRRWTLVIAKNCSSGVFYIRRGWSNFCSTNGLKQGDLCKFKLVQ-NGEKPVLWLCSH 248
                 7888999****************999544.45669***************66666666**************************99.677789999886 PP
3B364.31.9e-20294391199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 f+ ++ +++ +k+g+l+l+  f++e+g+ k++  + tl++++gr+W+  + +    + +++++++GW+e++kang+k++D++v++l++ +++++v+k++
  KFK29747.1 294 FLITEFTPNRFKNGQLYLSTGFTTENGITKPG--ETTLQNKDGRTWSSDIHMtgVEGNRWFYMRRGWREMCKANGVKVNDSFVLELVW-EDANPVFKFH 389
                 66678899******************999766..79999***********8776666677****************************.89999*9998 PP

                 -S CS
          B3  98 rk 99 
                 +k
  KFK29747.1 390 SK 391
                 76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.2E-121092IPR003340B3 DNA binding domain
CDDcd100171.96E-62788No hitNo description
Gene3DG3DSA:2.40.330.101.5E-103190IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-103390IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.083492IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-17146247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-18151250IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-26152249IPR003340B3 DNA binding domain
PROSITE profilePS5086314.311152248IPR003340B3 DNA binding domain
PfamPF023628.3E-19152248IPR003340B3 DNA binding domain
CDDcd100173.76E-16162247No hitNo description
Gene3DG3DSA:2.40.330.102.3E-17289391IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-16292390IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.7E-19294392IPR003340B3 DNA binding domain
PROSITE profilePS5086311.787294392IPR003340B3 DNA binding domain
PfamPF023622.2E-21294391IPR003340B3 DNA binding domain
CDDcd100177.45E-14307390No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MANPPRSSLF QQRFLTGNNP VLKLDDEFLR NYTKVLLRTD TSERFWKVYL DGDRLAGGWE  60
VFAGDNKFRD GDVLVFRHDG DENIHVSVSS RSNSGDIEHA SPCNVESDSE YEYEYDDDDG  120
EDEDDEDDDD GLGNISVRKN KKLEADSSSG RFVTAHVTRY SLHKDRLDLS RNLTVSLGEH  180
NKAHEIDLVN KQGRRWTLVI AKNCSSGVFY IRRGWSNFCS TNGLKQGDLC KFKLVQNGEK  240
PVLWLCSHES GNNHEEEECT EVDAVKNCSS GRGKAKNMSN DVSKGKNMKT PSSFLITEFT  300
PNRFKNGQLY LSTGFTTENG ITKPGETTLQ NKDGRTWSSD IHMTGVEGNR WFYMRRGWRE  360
MCKANGVKVN DSFVLELVWE DANPVFKFHS KIENNGSKGK GNRRTRKKRA CETDVTVEKT  420
PTIGIEGRTR VSYRDTTTNS RKLQRTEPKS CSISDQVTNV KRSIVDTLNT VKQFRSELET  480
REQNLEASLL EIDALGERIL GISQILNHKL V
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00602PBMTransfer from AT4G31610Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK29747.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412578.10.0B3 domain-containing protein REM1
SwissprotQ84J390.0REM1_ARATH; B3 domain-containing protein REM1
TrEMBLA0A087GIP50.0A0A087GIP5_ARAAL; Uncharacterized protein
STRINGA0A087GIP50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-180B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]