PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK29756.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 392aa    MW: 44923.4 Da    PI: 9.8908
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK29756.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.91e-1424981294
                HTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3 12 ksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                 s  l++p kf++ +  g  + e+ t+ l++  s ++W+vk+  ++++    lt+ WkeFv a++ ++gD+v+F+++g+  f  +v
  KFK29756.1 24 HS-HLSIPVKFFSVYieG-RN-EKNTVELRSdASEKTWTVKM--EGRK----LTEKWKEFVVAHDFRVGDIVIFRHEGDLVF--HV 98
                44.49*******999854.43.4458888886899*******..8888....***********************8775444..55 PP
2B375.46.3e-24172261494
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                 + ++ ++l+ ++l lpk+f++  g +k  + +++l+de  r+W+v+l++r +sg++++++GW++F+++ngLk gD+v+Fk ++++++++ +
  KFK29756.1 172 ARVTDSNLRDDILNLPKNFVRPQGPNKG-KNKIVLMDEGARTWTVNLRFRDSSGTFYMRTGWRSFCHENGLKPGDSVTFKQESNNTRTPIL 261
                 56789999************88877765.56*************************************************77766666655 PP
3B354.91.6e-17293387699
                 ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
          B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                  ++ +lk +rl+lp +f+ +++++++++k++t+ d++g +W v l + k+ +r+ +++G +eF +a g++e+++++++ld++ ++  + +k+++k
  KFK29756.1 293 ATPASLKYSRLYLPLNFIMDNKMETAGGKKITMLDKKGVKWPVSLLFIKGTRRMHFGSGLREFLEAIGVQENESFTLELDWEdTTVPPIFKFCSK 387
                 567889999**************************************99999999*************************998999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.63E-2010110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-2010106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.1112104IPR003340B3 DNA binding domain
CDDcd100173.19E-151399No hitNo description
SMARTSM010192.4E-2115104IPR003340B3 DNA binding domain
PfamPF023621.4E-92493IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-24162257IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-23163256IPR015300DNA-binding pseudobarrel domain
CDDcd100173.67E-23168257No hitNo description
SMARTSM010192.4E-28169267IPR003340B3 DNA binding domain
PROSITE profilePS5086315.848169266IPR003340B3 DNA binding domain
PfamPF023623.1E-21172262IPR003340B3 DNA binding domain
SMARTSM010199.7E-19288388IPR003340B3 DNA binding domain
PROSITE profilePS5086310.644288387IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-10288383IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-14289380IPR015300DNA-binding pseudobarrel domain
PfamPF023626.9E-17290387IPR003340B3 DNA binding domain
CDDcd100171.23E-11290385No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MANSVFFEAP KNPHFFQPIL PGFHSHLSIP VKFFSVYIEG RNEKNTVELR SDASEKTWTV  60
KMEGRKLTEK WKEFVVAHDF RVGDIVIFRH EGDLVFHVTG LGQSCCEIEY VQDNIENLSI  120
EQNRKTEQES SPEDDVKVKE NKGKFPRKKH GKKRNLEAET ESFSSDLPCF VARVTDSNLR  180
DDILNLPKNF VRPQGPNKGK NKIVLMDEGA RTWTVNLRFR DSSGTFYMRT GWRSFCHENG  240
LKPGDSVTFK QESNNTRTPI LRFSALEIKS VSTKRSSKGK RKTGEMELVT LTATPASLKY  300
SRLYLPLNFI MDNKMETAGG KKITMLDKKG VKWPVSLLFI KGTRRMHFGS GLREFLEAIG  360
VQENESFTLE LDWEDTTVPP IFKFCSKTKT SL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK29756.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_194894.21e-106AP2/B3-like transcriptional factor family protein
SwissprotQ8H2D01e-107REM7_ARATH; B3 domain-containing protein REM7
TrEMBLA0A087GIQ40.0A0A087GIQ4_ARAAL; Uncharacterized protein
STRINGA0A087GIQ40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31660.14e-99B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]