PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK29758.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 514aa    MW: 58519.2 Da    PI: 6.4629
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK29758.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.91.1e-105543995
                EE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3 39 ed.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                ++  s ++W+vk+  ++++    lt GWk+F+ a++ ++gD+++F+++g+  f  +v+
  KFK29758.1  5 TSeASKKTWKVKM--EGQR----LTVGWKDFAVAHDFRVGDVIIFRHQGDLVF--HVM 54
                4525679******..7777....***********************8776555..555 PP
2B352.49.5e-171081772998
                 -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 ++ +sk ++++de  r+W + l++r +s+++++  GW++F+++n Lk gD+v+Fkl++++++++++++f 
  KFK29758.1 108 DSMGSKAIVIMDEGERTWMLSLRFRESSETFFMIHGWRSFCHENVLKPGDSVMFKLERNNTKTPLLRFFT 177
                 4557899***********************9999***********************9999999999885 PP
3B341.91.8e-132843591597
                 -EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3  15 rlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  l +p kf+ eh  g +k++  t+ l++    ++W+v++  ++++    lt GWkeF+ a++ ++gD+++F+++g  +f ++v+ f
  KFK29758.1 284 YLKVPVKFFLEHiqGRNKRN--TVELTSdACEKTWKVEM--DGRR----LTVGWKEFAGAHDFRVGDIIIFRHEG--DFVFHVTGF 359
                 4889****999986666555..6666664888*******..9998....***********************766..665577765 PP
4B356.45.3e-18415511199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f++ +++s +lk++rl+lp++f+++++++++++k++tl+d++g +W v l      g + +++G  +F +a g+k+ +++v++l++++++++++k+++k
  KFK29758.1 415 FVTLTVTSFTLKNCRLYLPRSFTKDNKMETARGKKITLMDKNGVEWLVSL--LMDTGNMHFGEGLTNFLNAIGIKASESFVLELVWEDTTTPMLKFCSK 511
                 778889999*****************************************..55555666999**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.021159IPR003340B3 DNA binding domain
PROSITE profilePS5086312.167159IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-15871IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-12965IPR015300DNA-binding pseudobarrel domain
CDDcd100174.68E-71156No hitNo description
SMARTSM010195.5E-1291179IPR003340B3 DNA binding domain
PfamPF023621.3E-14110177IPR003340B3 DNA binding domain
SuperFamilySSF1019361.77E-13110176IPR015300DNA-binding pseudobarrel domain
CDDcd100172.98E-12112169No hitNo description
PROSITE profilePS5086312.576112179IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-11112168IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-5206261IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-5211262IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.1E-20267364IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.35E-18268368IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.251270362IPR003340B3 DNA binding domain
CDDcd100171.71E-13271359No hitNo description
SMARTSM010193.1E-18273362IPR003340B3 DNA binding domain
PfamPF023623.5E-8285355IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-14409511IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-14412510IPR015300DNA-binding pseudobarrel domain
CDDcd100177.21E-10414502No hitNo description
SMARTSM010192.9E-23415512IPR003340B3 DNA binding domain
PfamPF023621.2E-17415511IPR003340B3 DNA binding domain
PROSITE profilePS5086311.928415511IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MVELTSEASK KTWKVKMEGQ RLTVGWKDFA VAHDFRVGDV IIFRHQGDLV FHVMGFGPSC  60
CEIQYVQSNN NDEDCDDNDD EDEEEEDNIR NSQVKTEPES SPEGEDKDSM GSKAIVIMDE  120
GERTWMLSLR FRESSETFFM IHGWRSFCHE NVLKPGDSVM FKLERNNTKT PLLRFFTSES  180
KLVITKDSSK GKRKESGESS HIVSSPSSSL SENRFVTLTV TQSILKDGRL CLPRSFTRVN  240
GMENAGAKKI TVLDKNGVEW PDHVLQAPKN PHFFQPLLPG FDSYLKVPVK FFLEHIQGRN  300
KRNTVELTSD ACEKTWKVEM DGRRLTVGWK EFAGAHDFRV GDIIIFRHEG DFVFHVTGFG  360
PSCCELQYEH DNIRDLSMEQ NLKTDSSKGK RKETGESSHS QRVLSPSSSL SENRFVTLTV  420
TSFTLKNCRL YLPRSFTKDN KMETARGKKI TLMDKNGVEW LVSLLMDTGN MHFGEGLTNF  480
LNAIGIKASE SFVLELVWED TTTPMLKFCS KVKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK29758.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A087GIQ60.0A0A087GIQ6_ARAAL; Uncharacterized protein
STRINGA0A087GIQ60.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31660.14e-64B3 family protein