PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK29767.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 541aa    MW: 61449.6 Da    PI: 7.9933
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK29767.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.8e-1723991395
                TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3 13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                +++l +p  f+++h +   ++kt++l++  s  +Wev++  + ++ r  lt+GW+eFv+a++L++gD+vvF+++g+  f  +v+
  KFK29767.1 23 NSQLNIPVAFFTKHVKGRYQHKTVKLRSdASDLTWEVNI--EDGR-R--LTGGWEEFVEAHDLRVGDVVVFRHEGDLVF--HVT 99
                5679**********55556889****997888*******..4444.3..9**********************8876555..555 PP
2B361.31.6e-19156247499
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 + ++ ++l+++ +++p +f++++g++k+ + +++l de grsW+v+l    ksg ++l++GW++F++ang+++g   +Fkl++ +++++v++++++
  KFK29767.1 156 ANVTVSNLREDKVYVPVSFVRSNGLSKTHG-KIVLLDEMGRSWNVTLV-HYKSGDTFLRNGWRRFCNANGINQGRY-MFKLVR-NSGTPVFSLCQA 247
                 5678899999***************99877.****************5.55556789*****************96.9**998.7888***99986 PP
3B3711.5e-22261353498
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ++++++ +++ l+lpk+f++++g+k e++ +++l++e+g +W++ l+  k+ + +v+++GW +F++ang+k++D ++Fkl++ +e+++v+ ++ 
  KFK29767.1 261 RFLTPSSIRNDTLYLPKEFLSSNGLKDECG-EIVLKNEKGGRWNLVLRRIKSNNYMVISRGWTSFCEANGIKVRDPFMFKLVR-TEGKPVLCLCP 353
                 456888999999*************99998.****************88888888**************************98.88889999986 PP
4B358.61.2e-18442537199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f++ +++++  ks+ l lp +f++ +g+k  +  ++tl  ++g +W v l  +++sgr  l+k Wk+F++ +g+k g+++v++l++++++++v+k+++k
  KFK29767.1 442 FVTLTITPYFIKSNKLLLPLRFTRVNGIK-VG--KVTLLGQDGVKWMVSLVKENSSGRLRLGKDWKGFCEVHGVKLGESFVLELIWENDANPVLKFCNK 537
                 788899*****************888766.44..6****************9********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-238105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-219110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.95711104IPR003340B3 DNA binding domain
CDDcd100175.09E-151299No hitNo description
SMARTSM010191.3E-2214104IPR003340B3 DNA binding domain
PfamPF023622.5E-122393IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-18148245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-20149245IPR015300DNA-binding pseudobarrel domain
CDDcd100177.07E-15153245No hitNo description
PROSITE profilePS5086313.676153248IPR003340B3 DNA binding domain
SMARTSM010197.2E-25154248IPR003340B3 DNA binding domain
PfamPF023621.5E-18155247IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-21250359IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-23254355IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.115258355IPR003340B3 DNA binding domain
CDDcd100171.14E-20258353No hitNo description
PfamPF023623.0E-21259353IPR003340B3 DNA binding domain
SMARTSM010196.8E-28259355IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-17434537IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-18437536IPR015300DNA-binding pseudobarrel domain
CDDcd100175.15E-14441526No hitNo description
PfamPF023621.4E-18442537IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548442538IPR003340B3 DNA binding domain
SMARTSM010195.1E-25442538IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MKDQVLQSPT NPHFFQPLLP GFNSQLNIPV AFFTKHVKGR YQHKTVKLRS DASDLTWEVN  60
IEDGRRLTGG WEEFVEAHDL RVGDVVVFRH EGDLVFHVTA LGPSYCEIEY TAQNIDDVSD  120
EHKDNIASEK RLMKKRVKKN PRSDGDSSFD HSCFVANVTV SNLREDKVYV PVSFVRSNGL  180
SKTHGKIVLL DEMGRSWNVT LVHYKSGDTF LRNGWRRFCN ANGINQGRYM FKLVRNSGTP  240
VFSLCQAEYR HESDRHSCFV RFLTPSSIRN DTLYLPKEFL SSNGLKDECG EIVLKNEKGG  300
RWNLVLRRIK SNNYMVISRG WTSFCEANGI KVRDPFMFKL VRTEGKPVLC LCPTTESNHD  360
TSLVECSEAE SVNSLSTNPS SGEESSETEE SEENSIEDIT VKEESEEESI EDKSSLRECL  420
KIKKWKYYSS AGASSSSSQN RFVTLTITPY FIKSNKLLLP LRFTRVNGIK VGKVTLLGQD  480
GVKWMVSLVK ENSSGRLRLG KDWKGFCEVH GVKLGESFVL ELIWENDANP VLKFCNKVNS  540
V
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK29767.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010447536.10.0PREDICTED: B3 domain-containing protein REM17-like
RefseqXP_019089532.10.0PREDICTED: B3 domain-containing protein REM17-like
TrEMBLA0A087GIR50.0A0A087GIR5_ARAAL; Uncharacterized protein
STRINGA0A087GIR50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-133B3 family protein