PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK29940.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 382aa    MW: 43355.5 Da    PI: 8.0873
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK29940.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.92.8e-16261061398
                 TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 ++rlv+p kf ++++ k   +k +tl+++sg +++v l  + + ++   + +GW +Fvk++ L e D +vFk++g sef   v +f+
  KFK29940.1  26 HNRLVIPQKFSTHCKRK--LPKIVTLKSPSGVTYNVGL--EEHEDKtLAFCSGWDKFVKDHSLVEHDLLVFKFHGLSEF--EVLIFD 106
                 789********888766..8899***************..77766658899*********************9887888..787776 PP
2B350.34.4e-16278372398
                 EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS
          B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 
                  v+++s+vl++  l++p k   ++++ +++  +++ ++ +  +W++ +++ + +g   +++GW++F+++n+L+ gD++vF+   +  +  +l v +fr
  KFK29940.1 278 VVMKRSHVLSKFFLTIPMKWSWKNKLLEPQ--EVV-MQVDQTKWQLMFKFYGARGYGGISTGWRKFAQDNNLCMGDVCVFEPAkSGtKPHHLDVYIFR 372
                 57999*******************988666..566.5568999*****99888877789**********************55233366666666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-2013107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.92914108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-2015106IPR015300DNA-binding pseudobarrel domain
CDDcd100172.98E-1716106No hitNo description
SMARTSM010191.6E-1817108IPR003340B3 DNA binding domain
PfamPF023621.8E-1326106IPR003340B3 DNA binding domain
SMARTSM010198.5E-17276374IPR003340B3 DNA binding domain
PROSITE profilePS5086312.224276374IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-16277373IPR015300DNA-binding pseudobarrel domain
PfamPF023626.8E-14278372IPR003340B3 DNA binding domain
SuperFamilySSF1019361.35E-16278373IPR015300DNA-binding pseudobarrel domain
CDDcd100179.10E-18279372No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MKWEEELYWT HFQTLHFSQL LLPGFHNRLV IPQKFSTHCK RKLPKIVTLK SPSGVTYNVG  60
LEEHEDKTLA FCSGWDKFVK DHSLVEHDLL VFKFHGLSEF EVLIFDGDTF CEKPTCYFVK  120
KCGHAEKKTI KGIDFTATSS RSLKRDITTD DVETTQPVIT PDGNELEDLI DTDTDTDTDT  180
MLTPNVVVSS QTGYEQEEHI NSDIDTASGQ IPVVSPSSTR RISEGKYPLS VFKKMRGEIS  240
SINLDRKVGG RRKSISETSK RKALSLAKRA ISPNGLLVVM KRSHVLSKFF LTIPMKWSWK  300
NKLLEPQEVV MQVDQTKWQL MFKFYGARGY GGISTGWRKF AQDNNLCMGD VCVFEPAKSG  360
TKPHHLDVYI FRAAEAESSN NG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK29940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013705531.10.0B3 domain-containing protein REM16 isoform X1
SwissprotQ8RYD11e-161REM16_ARATH; B3 domain-containing protein REM16
TrEMBLA0A087GJ880.0A0A087GJ88_ARAAL; Uncharacterized protein
STRINGA0A087GJ880.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-153B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]