PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30083.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 334aa    MW: 37755.5 Da    PI: 6.5316
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30083.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.12.1e-151599897
                -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3  8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                 ++++s  l +p  f  e  ++ + +kt tl+   g  W+v + + k++g++ +++GW++Fv++n Lk+gD ++F +dg++ f   v++f
  KFK30083.1 15 LSHFSSESLAIPSFFN-EL-LPRRLPKTATLQGAGGCFWKVAF-MAKRDGGICFGQGWSKFVEDNLLKSGDLLTFVYDGKRVF--EVSIF 99
                5677888899998886.44.4567999****************.7888889**************************998777..77777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.14E-205102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-195101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.3528102IPR003340B3 DNA binding domain
CDDcd100171.59E-15899No hitNo description
SMARTSM010191.2E-1610102IPR003340B3 DNA binding domain
PfamPF023623.4E-131399IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-6235323IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-5238328IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAATDRLPRF FIVYLSHFSS ESLAIPSFFN ELLPRRLPKT ATLQGAGGCF WKVAFMAKRD  60
GGICFGQGWS KFVEDNLLKS GDLLTFVYDG KRVFEVSIFG AGGTKEKRAI AEVVDIEDDS  120
VYSLSSNDTD TSSEPEIPNT IARTRNSGKS RVEAVDDDSD EEDSDSDNSN SDDSSYSPDI  180
EENMTTLTIP NATTSRKRGT SKSVRNVEAS SSTLETSNRK YEPKIKNPEA YLLDPANIHF  240
ETSVKKRIYE LLIRSQIVKD YNLKFEEYVE FIDKHGKLKA KAMTWSDHRV CIKQWIKIIK  300
RNNLKKGDGV LVELLRNQNV VYAIHIHVVR EKDL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30083.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480357.11e-106PREDICTED: B3 domain-containing protein At4g34400-like isoform X1
TrEMBLA0A087GJN10.0A0A087GJN1_ARAAL; Uncharacterized protein
STRINGA0A087GJN10.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.11e-82B3 family protein