PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK30194.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

Nin-like

Protein Properties

Length: 233aa MW: 27036.1 Da PI: 10.231

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK30194.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.7	3.6e-26	97	146	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +sledlskyF pi +A++ L+++lTvLK++CR++GI+RWPhRkiksl KFK30194.1 97 AGLSLEDLSKYFGVPIVEASRRLNIGLTVLKKKCREFGIPRWPHRKIKSL 146 5699********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.179	81	166	IPR003035	RWP-RK domain
Pfam	PF02042	7.8E-22	99	146	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
NDLKFISDLK LKKVLKVSDQ ENCSRIRHCN FEVDRVQDCE VDQPKPRKIV LKQDLNRLPD 60 SETEAEESEK DKTEHSESDA KTETMKKQKR TPSEHVAGLS LEDLSKYFGV PIVEASRRLN 120 IGLTVLKKKC REFGIPRWPH RKIKSLDTLI HDLQGEAEKQ KNEAAALAVA KRQKKLETEK 180 INMVKRPFME IQIETKKFRQ DNFKKRHKAS RAKKNQESLV TSSSTFKILD LLT

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK30194.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006412085.1	1e-114	protein RKD5
Swissprot	O81791	1e-103	RKD5_ARATH; Protein RKD5
TrEMBL	A0A087GJZ2	1e-168	A0A087GJZ2_ARAAL; Uncharacterized protein (Fragment)
STRING	A0A087GJZ2	1e-169	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12049	24	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-102	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]