PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30213.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 270aa    MW: 28609.6 Da    PI: 4.2344
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30213.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00048176196323
                 ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                 C++C k F ++     H+r+H
  KFK30213.1 176 CNICRKEFVSWKGVFGHLRSH 196
                 *******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MSNPEKAPMN TEEEIIDESY SECSDWSDLE EGEIRELVLA LPALSVSERM NANEEIRQKA  60
VVAAGLVVAA AQEAGVETGT VEPSVAAGTI EPAVSAGTIE PPLAMGTTGS AVATATTEPM  120
IGGSGESGKK KKVGRPRKGD VAAKAGGSGE EGEVVKKARK KGSSTLTHPP EGPPICNICR  180
KEFVSWKGVF GHLRSHKNRD YKGYQPPPTF NAAEEGFGLG TGGVDIDLND PPMGEEEEEP  240
SESESVPQFD LNMFPTHEEE EEEREGDKAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30213.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A087GK110.0A0A087GK11_ARAAL; Uncharacterized protein
STRINGA0A087GK110.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.15e-29C2H2 family protein