PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30259.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GATA
Protein Properties Length: 231aa    MW: 25916.1 Da    PI: 7.6856
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30259.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.59.2e-19159193135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  KFK30259.1 159 CSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRL 193
                 *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169927.7E-841231IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.292153189IPR000679Zinc finger, GATA-type
SMARTSM004012.8E-13153207IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.85E-13155216No hitNo description
Gene3DG3DSA:3.30.50.105.6E-14157191IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.4E-16159193IPR000679Zinc finger, GATA-type
CDDcd002021.40E-14159215No hitNo description
PROSITE patternPS003440159184IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MECVESFLGD FAVDDLLDLS NTDAFVREES FSSQREQEQE RDKAKSFSDQ STRLSPLQDL  60
FSFPSSELDV PVGDMEDLEW LSNFVEDSFS ESYISGEIPV NPVTSVKAQR KCVPVKPRSK  120
RRRTNNRIWS LSTAVSDAGN KKVETSSGGG ILQQLRRCCS HCGVQKTPQW RMGPLGAKTL  180
CNACGVRFKS GRLLPEYRPA CSPTFSTEIH SNSHRKVLEL RLKKTEDSGR V
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30259.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0221412e-62AL022141.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E13 (ESSAII project).
GenBankAL1615892e-62AL161589.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85.
GenBankAY0724342e-62AY072434.1 Arabidopsis thaliana putative protein (At4g36240) mRNA, complete cds.
GenBankAY1147202e-62AY114720.1 Arabidopsis thaliana putative protein (At4g36240) mRNA, complete cds.
GenBankCP0026872e-62CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_195347.11e-122GATA transcription factor 7
SwissprotO655151e-123GATA7_ARATH; GATA transcription factor 7
TrEMBLA0A087GK571e-169A0A087GK57_ARAAL; GATA transcription factor
STRINGA0A087GK571e-170(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146541720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.11e-118GATA transcription factor 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]