PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30292.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GRAS
Protein Properties Length: 493aa    MW: 55247.4 Da    PI: 4.9667
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30292.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS322.86.9e-991204922374
        GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlar..svselykal.ppsetseknsseelaalklfsevsPilkfshl 96 
                 +e L++++++v+s++l+l + +L+rl+++ +sp g+p+qR+a+yf+e+L++ l++    +++ + l ++s++s+++ ++++ a k +s +sPi+ fsh+
  KFK30292.1 120 IEDLIRVVDCVESDELQLGHVILSRLNQRlRSPVGRPLQRAAFYFKEGLNSLLTGlnRNPTTNRLLsSSSSSSWSEIVQKIRAIKEYSGISPIPLFSHF 218
                 678*************************99************************97445555555555556666779********************** PP

        GRAS  97 taNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                 taNqaIl++++++       vH++Df+i+ G+Q+++L++++a+++     lR+T+v+   ++s+ e++ ++e+L++fA+e++++f+f+++++k++e+l+
  KFK30292.1 219 TANQAILDSLNSSqssssPFVHVVDFEIGFGGQYASLMREIAEKSVTGGFLRVTAVVT--EDSAVETRLVKENLTQFAAEMKIRFQFEFVLMKTFEMLS 315
                 **********99866666789*************************************..459************************************ PP

        GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpreseerikvE 286
                 ++++r+  gE ++V ++ +++r l   + +    ++++  ++++sPkvvv+v++e  ++  +s+sF ++f++ale+y+++++sl+a +p+ +  ++ vE
  KFK30292.1 316 FKSIRFVDGERTIVLISPAIFRRL---TGI----SDFVTNLRRVSPKVVVFVDSEgwTEIsGSGSFRREFVSALEFYTMVLESLDAAAPPGDLVKKIVE 407
                 ***********************9...444....46*******************766668999*********************************** PP

        GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++l+++i  +v ++ ++   r+   ++Wre++ ++G++p++ls++a  qa++ll+k +++g++v +++g+lvl+W++r+Lv++SaWr
  KFK30292.1 408 TFVLRPRIFAAVETAADR---RNVGEMTWREAFCAVGMRPIQLSQFADFQAECLLEKAQVRGFHVAKRQGELVLCWHGRALVATSAWR 492
                 *************99998...89999*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.75493472IPR005202Transcription factor GRAS
PfamPF035142.4E-96120492IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MKIPASSSPQ DNNNNTTSTD SNHLSMDEHV MRSMDWDSIM KELELDDDST PNSLKTSFTT  60
TNTDSTILPL YTVDTNLPGF PDQIQPSDFE SSDVFQNQNQ NSGYSFNSLE NIDNGGFDFI  120
EDLIRVVDCV ESDELQLGHV ILSRLNQRLR SPVGRPLQRA AFYFKEGLNS LLTGLNRNPT  180
TNRLLSSSSS SSWSEIVQKI RAIKEYSGIS PIPLFSHFTA NQAILDSLNS SQSSSSPFVH  240
VVDFEIGFGG QYASLMREIA EKSVTGGFLR VTAVVTEDSA VETRLVKENL TQFAAEMKIR  300
FQFEFVLMKT FEMLSFKSIR FVDGERTIVL ISPAIFRRLT GISDFVTNLR RVSPKVVVFV  360
DSEGWTEISG SGSFRREFVS ALEFYTMVLE SLDAAAPPGD LVKKIVETFV LRPRIFAAVE  420
TAADRRNVGE MTWREAFCAV GMRPIQLSQF ADFQAECLLE KAQVRGFHVA KRQGELVLCW  480
HGRALVATSA WRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2611349113378Protein SCARECROW
5b3h_A2e-2612549124377Protein SCARECROW
5b3h_D2e-2612549124377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30292.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283643.10.0scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A087GK900.0A0A087GK90_ARAAL; Uncharacterized protein
STRINGA0A087GK900.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]