PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30311.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 148aa    MW: 16625.8 Da    PI: 10.7349
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30311.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.4e-192675255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+e Aa+a++ a  +l+g
  KFK30311.1 26 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPEAAARAYDTAVFYLRG 75
                69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.5E-382689IPR001471AP2/ERF domain
PROSITE profilePS5103222.8132683IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-222684IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.2E-312784IPR001471AP2/ERF domain
PfamPF008472.4E-122775IPR001471AP2/ERF domain
PRINTSPR003673.7E-92738IPR001471AP2/ERF domain
CDDcd000186.94E-262785No hitNo description
PRINTSPR003673.7E-94965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
METSTEVVST QVVTTATTVT RKREKPYKGI RMRKWGKWVA EIREPNKRSR IWLGSYSTPE  60
AAARAYDTAV FYLRGPSARL NFPELLAGIT VTRGGDCDMS AAYIRRKAAE VGAQVDALET  120
AGGHHRHQHQ QQHHQGSLFS TGKWSNRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-162583463ATERF1
3gcc_A2e-162583463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30311.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0031037e-64AF003103.1 Arabidopsis thaliana AP2 domain containing protein RAP2.10 mRNA, partial cds.
GenBankAJ0025987e-64AJ002598.1 Arabidopsis thaliana mRNA for TINY-like protein.
GenBankAL1615907e-64AL161590.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 86.
GenBankBT0203177e-64BT020317.1 Arabidopsis thaliana At4g36900 gene, complete cds.
GenBankBT0257577e-64BT025757.1 Arabidopsis thaliana At4g36900 mRNA, complete cds.
GenBankCP0026877e-64CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ997077e-64Z99707.1 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138483.18e-72PREDICTED: ethylene-responsive transcription factor RAP2-10-like
SwissprotQ9SW634e-64RA210_ARATH; Ethylene-responsive transcription factor RAP2-10
TrEMBLA0A087GKA91e-106A0A087GKA9_ARAAL; Uncharacterized protein
STRINGA0A087GKA91e-107(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.11e-58DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]