PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30334.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB
Protein Properties Length: 259aa    MW: 30392.9 Da    PI: 5.4729
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30334.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.2e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEde+l+ +++++G g+W++ + + g++R++k+c++rw++yl
       KFK30334.1 14 KGEWTAEEDEKLIAYINKHGIGDWRSLPIRAGLRRCGKSCRLRWLNYL 61
                     799*******************************************97 PP
2Myb_DNA-binding54.33.1e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE+e +++ ++ lG++ W++Ia+ m  +Rt++++k++w++
       KFK30334.1  67 RGKFTPEEEEDIIRHHAVLGNR-WAAIAKQME-NRTDNDIKNHWNS 110
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.686961IPR017930Myb domain
SuperFamilySSF466898.8E-3012108IPR009057Homeodomain-like
SMARTSM007173.1E-141363IPR001005SANT/Myb domain
PfamPF002491.4E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-231568IPR009057Homeodomain-like
CDDcd001671.99E-101661No hitNo description
PROSITE profilePS5129424.83562116IPR017930Myb domain
SMARTSM007172.8E-1566114IPR001005SANT/Myb domain
PfamPF002491.3E-1567110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2469116IPR009057Homeodomain-like
CDDcd001671.83E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGKTTWFDND GMRKGEWTAE EDEKLIAYIN KHGIGDWRSL PIRAGLRRCG KSCRLRWLNY  60
LRPGIKRGKF TPEEEEDIIR HHAVLGNRWA AIAKQMENRT DNDIKNHWNS SLKKRLQRKG  120
LDPMTHEPII NNFTVKTTNE VYGNSSATTS SMENPSSSYC KSARLLNKIA ASVSSRQHSV  180
DRIRKIMSDL KIISNDQDYE ERETKMDENV SDGQENEFLM WDEEEIERFI ESTDDVMEYE  240
TTLYESVFYE NTHMLDDFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-27121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30334.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602606.11e-125PREDICTED: transcription factor MYB34-like isoform X1
RefseqXP_013602607.11e-125PREDICTED: transcription factor MYB34-like isoform X2
TrEMBLA0A087GKD20.0A0A087GKD2_ARAAL; Uncharacterized protein
STRINGA0A087GKD20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18710.11e-113myb domain protein 47