PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK30371.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

LBD

Protein Properties

Length: 228aa MW: 25054.5 Da PI: 8.4239

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK30371.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.7	4.9e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C++ C+l+p++ +++q +++ +v+k+FG++ ++++++++pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e+ KFK30371.1 2 SCNGCRVLRKGCSETCILRPCLqwiesAESQGHATVFVAKFFGRAGLMSFISTVPELNRPALFQSLLFEACGRTVNPVNGAVGMLWTGNWHVCQAAVET 100 6*******************9999777889**************************************************************999 PP DUF260 95 all 97 +l+ KFK30371.1 101 VLR 103 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.325	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-25	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATVFVA KFFGRAGLMS FISTVPELNR 60 PALFQSLLFE ACGRTVNPVN GAVGMLWTGN WHVCQAAVET VLRGGTLRPI SDLLESPSLN 120 FSDQNSQSHH CRFSNSRSKV STTEMEETRV NRKRVKYDRF GSDLDLQLTG STVPVSLLPS 180 PAFCKVANGD RPGSPSEESV TTSCWENGIN GGEKYRTKGD KKLLNLFV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK30371.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411876.1	1e-128	LOB domain-containing protein 39
Swissprot	Q9SZE8	1e-126	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A087GKG9	1e-168	A0A087GKG9_ARAAL; Uncharacterized protein
STRING	A0A087GKG9	1e-169	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	1e-129	LOB domain-containing protein 39