PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30394.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GeBP
Protein Properties Length: 387aa    MW: 44515.9 Da    PI: 4.2285
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30394.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57391.31.1e-2868159697
      DUF573   6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                   +++De+++L+G+ d++++t+ s+ +++dafy f+k+si+++++k+ql +Kir+LKk+f+++ +k+ +gk psf+++++++if+ls+ iWg
  KFK30394.1  68 TLTKNDELLILKGIEDYEEETKLSYRSEWDAFYAFIKDSIELNFTKEQLRSKIRKLKKRFTDNLAKSGHGKGPSFNNSNEEEIFQLSMVIWG 159
                 4799***************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.9E-2370159IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDSIDSDDSD INRFEIRIND RASSLSSQLT RKRDDDEEEV SDQETKLIKK PRTSTTTLVT  60
SSTPSKITLT KNDELLILKG IEDYEEETKL SYRSEWDAFY AFIKDSIELN FTKEQLRSKI  120
RKLKKRFTDN LAKSGHGKGP SFNNSNEEEI FQLSMVIWGE KNEIECASNV NMDQATDSAI  180
VEHEQIKENV ELAKDATSVE LESINENVEQ EKADLTNVEH EHVSENVAQA EELTCVEHEQ  240
ITQNIEQPKD FTNVEHEQSN ENVEQAEDVT HVEREQINEN MAQAEDATYV EHEQITENME  300
QTKVDNGENE TNNEKVGAEE FSVLQDAFEA TLFPRLDTTH QKLMLENLRN LKAEKGKELT  360
EEWKTLLVEE IKFNVMKLTF SAKLVEA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30394.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A087GKJ20.0A0A087GKJ2_ARAAL; Uncharacterized protein
STRINGA0A087GKJ20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124401528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36340.11e-55DNA-binding storekeeper protein-related transcriptional regulator