PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30501.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB_related
Protein Properties Length: 100aa    MW: 11373.7 Da    PI: 9.609
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30501.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-091257245
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     g+WT+   + + +a + +  +   +W+ +a+ +g g+t +++k ++ 
       KFK30501.1 12 GSWTAKQNKAFEQALATYDQDtpnRWHNVAKLVG-GKTTEEVKRHYE 57
                     89*****************99*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.233964IPR017884SANT domain
SMARTSM007179.4E-91062IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-51158IPR009057Homeodomain-like
PfamPF002491.8E-71257IPR001005SANT/Myb domain
SuperFamilySSF466894.86E-131268IPR009057Homeodomain-like
CDDcd001675.11E-71460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MASSSMSSQS SGSWTAKQNK AFEQALATYD QDTPNRWHNV AKLVGGKTTE EVKRHYELLV  60
QDINNIENGH VPFPNYKTSG SCTNGRLIQE EKRMRNMRLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-367100393RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30501.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002868895.17e-59protein RADIALIS-like 1
SwissprotF4JVB84e-59RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A087GKU94e-70A0A087GKU9_ARAAL; Uncharacterized protein
STRINGA0A087GKU96e-71(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-60RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]