PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30603.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family LBD
Protein Properties Length: 211aa    MW: 22804.4 Da    PI: 5.007
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30603.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.93.4e-3871071100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+++C++apyf +e+ +++f +vhk+FGasn  kll+++p ++r da+ +l yeA ar++dPvyG+vg+i++lq+q+++l+aela+ +
  KFK30603.1   7 PCGACKFLRRKCVAECIFAPYFDSEEgAAHFTAVHKVFGASNAAKLLSTVPASQRLDAVVTLSYEAFARLSDPVYGCVGHIFALQHQVMNLQAELAYFQ 105
                 7*********************998879********************************************************************988 PP

      DUF260  99 ee 100
                 ++
  KFK30603.1 106 TH 107
                 76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.7076108IPR004883Lateral organ boundaries, LOB
PfamPF031957.2E-387105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MSAGGSPCGA CKFLRRKCVA ECIFAPYFDS EEGAAHFTAV HKVFGASNAA KLLSTVPASQ  60
RLDAVVTLSY EAFARLSDPV YGCVGHIFAL QHQVMNLQAE LAYFQTHLSA LQRIPPPNPQ  120
KNSPPEAASS SNVSLIAYFD DNNNNNNNNR SNVSMSQQQE DIKVSAESLD FSSLLGLEDP  180
ADEDGDLNAL AREFLSKYLN GGKCRESPPS I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3651089111LOB family transfactor Ramosa2.1
5ly0_B2e-3651089111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30603.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879137.11e-109LOB domain-containing protein 31
SwissprotO813221e-100LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A087GL511e-154A0A087GL51_ARAAL; Uncharacterized protein
STRINGA0A087GL511e-155(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.13e-94LOB domain-containing protein 31