PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30604.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family LBD
Protein Properties Length: 228aa    MW: 24112.2 Da    PI: 7.4741
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30604.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.62e-38181181100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+++C++ap+f +eq +++f +vhk+FGasnv+kll+ +pe++r+da+ ++++eA+ r+rdPvyG+v++i +lqqq+ +l++el++l+
  KFK30604.1  18 PCGACKFLRRKCVSGCIFAPHFDSEQgAAHFSAVHKVFGASNVSKLLNIVPEHKRPDAVVCICFEAHSRLRDPVYGCVSHIVSLQQQVLSLQSELSYLQ 116
                 7***********************9989********************************************************************999 PP

      DUF260  99 ee 100
                 ++
  KFK30604.1 117 AH 118
                 86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.90417119IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-3718116IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MSSGVNPSSS GGGGGSGPCG ACKFLRRKCV SGCIFAPHFD SEQGAAHFSA VHKVFGASNV  60
SKLLNIVPEH KRPDAVVCIC FEAHSRLRDP VYGCVSHIVS LQQQVLSLQS ELSYLQAHLA  120
TLELPQPPPA PATSSCSPPP FSISDLPTIT TSSVYDLSSI FEPMSSTWAM QQQQPRPLDQ  180
YYGVPSSSNI GGGGEFQALA REFIHGGQMP TQPPPGTSGS ASRVIKRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-35141197111LOB family transfactor Ramosa2.1
5ly0_B2e-35141197111LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30604.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396221.11e-116LOB domain-containing protein 30
SwissprotO813231e-112LBD30_ARATH; LOB domain-containing protein 30
TrEMBLA0A087GL521e-165A0A087GL52_ARAAL; Uncharacterized protein
STRINGA0A087GL521e-165(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.17e-83LBD family protein
Publications ? help Back to Top
  1. Rast-Somssich MI, et al.
    The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin.
    J. Exp. Bot., 2017. 68(11): p. 2741-2755
    [PMID:28472464]
  2. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]