PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30638.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GeBP
Protein Properties Length: 304aa    MW: 34925.2 Da    PI: 10.0643
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30638.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57367.23.6e-21120208197
      DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                 k+f+r+w e De++lL ++i+f    g +p ++ ++f++ v+  i+++++ sql +K+ r+KkKf +k +k    + +sfsk hd+ +fe s+ iWg
  KFK30638.1 120 KQFERIWLEADEVALLDAVITF----GRNPLKEKTEFHDLVRPLIQIEATLSQLESKLTRMKKKFIRKANK----SVVSFSKLHDRTCFEKSQAIWG 208
                 579*******************....99******************************************9....999******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.3E-17122208IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAKKQNKKPV EQAPMEEVEL AMEEERNELL RTPPSNGLAS DSENERDVST VKKSKKTKKT  60
KKKKKDRSEK KEDIELSPAS EKKEVAESSV DSATTKTKKR PLEESSSEAK EKRVKTEEKK  120
QFERIWLEAD EVALLDAVIT FGRNPLKEKT EFHDLVRPLI QIEATLSQLE SKLTRMKKKF  180
IRKANKSVVS FSKLHDRTCF EKSQAIWGPN GFLAVKDKDK KPVVWVTEED AWLVGSYLLG  240
SVVIDGVSEE SVKDAWNSFS KERKQKMEEK FRVCEMKAIK SAILKKELIL EFTSSVYEAL  300
RLKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16070KKKKKDRSEKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30638.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A087GL860.0A0A087GL86_ARAAL; Uncharacterized protein
STRINGA0A087GL860.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01370.13e-28DNA-binding storekeeper protein-related transcriptional regulator