PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30641.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GeBP
Protein Properties Length: 128aa    MW: 14971.3 Da    PI: 8.5198
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30641.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573766.5e-24188297
      DUF573  2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97
                +fqr+ws+ DeivlL  +i+f    + +p  ++ af++ v+  i+++v++sql +Kir+++ Kf +k +k    + +sfsk hd+ +fe s+ iWg
  KFK30641.1  1 MFQRMWSQADEIVLLDSVITF----ERNPLREMAAFHDLVRPLIQVEVTNSQLDTKIRNMRMKFLRKAHK----SVVSFSKLHDRTCFEKSQAIWG 88
                59*******************....5689**************************************999....999******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.0E-20288IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MFQRMWSQAD EIVLLDSVIT FERNPLREMA AFHDLVRPLI QVEVTNSQLD TKIRNMRMKF  60
LRKAHKSVVS FSKLHDRTCF EKSQAIWGPN GILPVERKVK DKDKKPVVLV TGKDEWFEGE  120
EAEDGREV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30641.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A087GL892e-89A0A087GL89_ARAAL; Uncharacterized protein
STRINGA0A087GL894e-90(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.18e-21DNA-binding storekeeper protein-related transcriptional regulator