PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30661.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HD-ZIP
Protein Properties Length: 495aa    MW: 54951.4 Da    PI: 6.4637
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30661.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.53.6e-21124179156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++eLe++F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  KFK30661.1 124 KKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 179
                 688999***********************************************999 PP
2START152.43.9e-483154941165
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT. CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg. 88 
                 ela++a++elvk+a +eep+Wvks     +++n++e++++f+++k     +ea+r+sg+v+ ++  lve+l+d++ +W+e+++    +a+t++vis g 
  KFK30661.1 315 ELALTAMDELVKLAHSEEPLWVKSLdgerDELNQEEYMRTFSSTKPtgLVTEASRVSGMVIINSLALVETLMDSN-RWTEMFPcnvaRATTTDVISGGm 412
                 5899*************************************99999999**************************.*********************** PP

                 .....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEE CS
       START  89 .....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvt 165
                      galqlm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++++  s+ ++R  +lpSg++++++sng+skv 
  KFK30661.1 413 agtinGALQLMNAELQVLSPLVPvRNVNFLRFCKQHAEGVWAVVDVSIDAVRENSGgSPVIIR--RLPSGCVVQDMSNGYSKVK 494
                 *******************************************************98888888..*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-21110181IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-22112181IPR009057Homeodomain-like
PROSITE profilePS5007117.297121181IPR001356Homeobox domain
SMARTSM003899.5E-18122185IPR001356Homeobox domain
CDDcd000863.46E-18124181No hitNo description
PfamPF000461.1E-18124179IPR001356Homeobox domain
PROSITE patternPS000270156179IPR017970Homeobox, conserved site
PROSITE profilePS5084832.493306495IPR002913START domain
CDDcd088757.39E-88310495No hitNo description
SuperFamilySSF559611.36E-21310493No hitNo description
SMARTSM002341.2E-6315495IPR002913START domain
PfamPF018521.5E-41315494IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MNFGSLFDNT TTGGGPTGAR LLSGLTYAGG PTGSPTAASL FSPPLTKSVY SSSGLSLALE  60
QPERGSNSGG GEASMMRNNN NNFDGSSVNR RSREDEHEST RSGSDNVEGI SGEDQDNDDK  120
PPRKKRYHRH TPQQIQELES MFKECPHPDE KQRLELSKRL CLETRQVKFW FQNRRTQMKT  180
QLERHENALL RQENDKLRAE NMTIREAMRN PICTNCGGQA MLGDVSLEEH HLRIENARLK  240
DELDRVCNLT GKFLGHNHNH HNHHNHHNNS SLELAVGTNN GGNFSFPPDF SLPPPQQQQQ  300
QTLINGIDQR SVLLELALTA MDELVKLAHS EEPLWVKSLD GERDELNQEE YMRTFSSTKP  360
TGLVTEASRV SGMVIINSLA LVETLMDSNR WTEMFPCNVA RATTTDVISG GMAGTINGAL  420
QLMNAELQVL SPLVPVRNVN FLRFCKQHAE GVWAVVDVSI DAVRENSGGS PVIIRRLPSG  480
CVVQDMSNGY SKVKI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30661.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287095.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
RefseqXP_023636258.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A087GLA90.0A0A087GLA9_ARAAL; Uncharacterized protein
STRINGA0A087GLA90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]