PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30695.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 429aa    MW: 49031 Da    PI: 6.6063
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30695.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM123.71.6e-3861323128
         NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 +GfrF Pt+eel+++yLk+k +g+   ++++i+e++i ++eP  Lp  +k+++++  wyfFs  ++++ ++k ++r+t sg+Wk tg d+e+++ k+ +
  KFK30695.1   6 VGFRFYPTEEELINHYLKNKNQGQFWLVDDAINEINIRSYEPMFLPslSKIQSNDLVWYFFSLIEHTSGNKKGTKRSTVSGFWKVTGVDREIKV-KNVV 103
                 7************************999999***************5448888888**************************************.999* PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 +g+kktLv++kgr+p+g++t Wv hey++
  KFK30695.1 104 IGIKKTLVYHKGRHPNGVRTPWVTHEYHI 132
                 ***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.8684150IPR003441NAC domain
SuperFamilySSF1019413.27E-445150IPR003441NAC domain
PfamPF023652.1E-216132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MEKNLVGFRF YPTEEELINH YLKNKNQGQF WLVDDAINEI NIRSYEPMFL PSLSKIQSND  60
LVWYFFSLIE HTSGNKKGTK RSTVSGFWKV TGVDREIKVK NVVIGIKKTL VYHKGRHPNG  120
VRTPWVTHEY HITYLPPDQR NYVICKVMYN GEDMDILYGG NSNLCVPQPS HSFVPDSNTA  180
NTMSMNVQED LSPSNGFNPD DFLNDNDNNN DNNLDVLLNP MNVQKDLSPT YGNPDTLVSE  240
YMNNNNLNVQ PQTPYDYEYC SGVLDYDEMM GIEYLLSSPE FRMQENRNNH MAKKPITRVI  300
TAGYSSNSDA ESISATSYQG TSSPDGSPNK HFPSCSNTES FKDPQTSEEP SINRKNRESQ  360
LTRRTISSKQ EVKEGKSKAV SASKESSMAK KGLFITEEAI QRKGKNPRYI YLMNMIICFI  420
VLVTFLKFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-24713218140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30695.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_192064.11e-129NAC domain containing protein 69
SwissprotQ9M1261e-130NAC69_ARATH; NAC domain-containing protein 69
TrEMBLA0A087GLE30.0A0A087GLE3_ARAAL; Uncharacterized protein
STRINGA0A087GLE30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.11e-112NAC domain containing protein 69
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]