PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30696.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 418aa    MW: 47348.1 Da    PI: 6.1978
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30696.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM139.91.5e-4371333128
         NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 +G+rFhPt eel+++yLk+k+ gk+  ++++i+e++i+++eP  Lp  +k+++++ ewyfFs r+ ++a+++ ++r+t++gyWk tg d+++++ kg +
  KFK30696.1   7 VGYRFHPTGEELINHYLKNKILGKSWLVDDAISEINICNYEPIFLPslSKLESKDPEWYFFSLREYASAKKTAAKRTTRTGYWKVTGADRKIKD-KGGV 104
                 7************************999999**************95448888889**************************************.8889 PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 +g+kkt+vfy+gr p+g++t Wvmhey++
  KFK30696.1 105 IGIKKTIVFYEGRVPNGVRTPWVMHEYHI 133
                 ***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100546.4955151IPR003441NAC domain
SuperFamilySSF1019416.15E-486151IPR003441NAC domain
PfamPF023651.7E-247133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MDKKNLVGYR FHPTGEELIN HYLKNKILGK SWLVDDAISE INICNYEPIF LPSLSKLESK  60
DPEWYFFSLR EYASAKKTAA KRTTRTGYWK VTGADRKIKD KGGVIGIKKT IVFYEGRVPN  120
GVRTPWVMHE YHITCLPPHQ RNYVICKVMY KGEDMDILSG GNSNLSVPQP SHSSVSDLNS  180
VRAVNTAPEV EQPAEDGLYM DDLLKPINEQ EDLSPSGGFN TDTFFSDYND NFNVQPQTPC  240
DNEYWNRLLG YNDGNFEDVF SCTELIMQEN RNNHMAKKPV TGIIPDYSSD SDDAESISAT  300
SYHGTSSSDD SPNSHFPSCS NTDSFKDLQS SEDPHRKILE SQLTRRTIAS KQEVKEGKSR  360
VVSASKESSI AKTEKKGLFI TEEAIQRKGN NPRYIYLMNM IIGFILLVPL LATAYRFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-28813318140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00426DAPTransfer from AT4G01550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30696.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444884.11e-169PREDICTED: NAC domain-containing protein 69-like
SwissprotQ9M1261e-157NAC69_ARATH; NAC domain-containing protein 69
TrEMBLA0A087GLE40.0A0A087GLE4_ARAAL; Uncharacterized protein
STRINGA0A087GLE40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.11e-131NAC domain containing protein 69
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]