PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30968.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family WRKY
Protein Properties Length: 517aa    MW: 56721.9 Da    PI: 6.5862
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30968.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.5e-31281339259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  KFK30968.1 281 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRSILITTYEGNHNHP 339
                 7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-34265341IPR003657WRKY domain
SuperFamilySSF1182904.71E-28273341IPR003657WRKY domain
PROSITE profilePS5081129.838275341IPR003657WRKY domain
SMARTSM007748.1E-38280340IPR003657WRKY domain
PfamPF031068.0E-27282339IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MFRFPVSLEG PRDNTKQQHI SDEQPQHRVV MDEVDFFRSA EKRDRVSRDH DQKIIADDVK  60
RENSRVDDHD DRSTDINIGL NILTTNTISD ESTVDDGLSV DMEEKRTKCE NAQLREELRK  120
SNEDNQRLKE MLSQTTNNFN SLQMQLVAVM RQQEDHQHLA TVESNKEKKR HEAPGMLPRQ  180
FMDLGPSSAE VTSVETTAVP SGSPPSLLEN SNSRQGGKRL LVREESPDTE YNGWGNPNKL  240
QKHNASSSNC NGNVIDQSAA EATMRKARVS VRARSEAPML SDGCQWRKYG QKMAKGNPCP  300
RAYYRCTMAV GCPVRKQVQR CAEDRSILIT TYEGNHNHPL PPAAMTMAST TTAAASMLLS  360
GSTMSSQDGL MNPTNILART MLPCSSSMAT ISASAPFPTI TLDLTDSSNG NNATNNNPLM  420
QFSQRADFAA ALNQSVLPQV MGQAMYYNQQ QSKFSGLSQS LNAGESVSAA TAAIASNPNF  480
AAALAAAITS IINGSNNHQN GNTSNSNVTT SNVDNRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-22267343176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30968.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432828.10.0PREDICTED: WRKY transcription factor 42-like
SwissprotQ9XEC30.0WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A087GM660.0A0A087GM66_ARAAL; Uncharacterized protein
STRINGA0A087GM660.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.10.0WRKY family protein