PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK31098.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 460aa    MW: 50487.3 Da    PI: 6.8422
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK31098.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.47.7e-114571127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                ++++ C+ff+rtG C yG++C+++H+p
  KFK31098.1 45 PGERDCQFFLRTGLCGYGNTCRYNHPP 71
                5789*********************96 PP
2zf-CCCH36.58.1e-1291115327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++ C +f++tG CkyG++Ck++H++
  KFK31098.1  91 QPDCEYFLKTGACKYGATCKYHHPK 115
                 789********************96 PP
3zf-CCCH28.62.5e-09136159326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 ++ C++++ tG C++G  CkF+H+
  KFK31098.1 136 EKACPYYMHTGSCRFGVACKFHHP 159
                 678********************8 PP
4zf-CCCH41.32.6e-13270294327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++Crff+ tGtCkyGd Ck++H++
  KFK31098.1 270 RAECRFFMNTGTCKYGDDCKYIHPK 294
                 799********************96 PP
5zf-CCCH32.71.3e-10315341127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++ C +f ++G Ck+G++CkF H++
  KFK31098.1 315 PGQPACGNFKAYGVCKFGANCKFDHSM 341
                 57899********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.5E-64471IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1644472IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-84671IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-54872IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-45070IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-688115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.65288116IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-991115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-693116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-494114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-6131161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.286133161IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-4135160IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-7136159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.967267295IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-8268294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-7268296IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-11270294IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-7273295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5312340IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-5314341IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.488314342IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-8316340IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-4320340IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MTETQQLQNS TGSIPSSEKI EDTFRRMKVN EENMEQSSPT YPDRPGERDC QFFLRTGLCG  60
YGNTCRYNHP PTHLPHGVIY HRDELPERIG QPDCEYFLKT GACKYGATCK YHHPKDRNGA  120
GPVLFNVLGY PMRMGEKACP YYMHTGSCRF GVACKFHHPH PNNTQPLNGH STYAGGYPSV  180
GYPYGGGLPM MSLPPATYGA MSRPQVPQPQ AYMPYMVAPS QGLCLPPQAW APYMGASNPI  240
YNMKTQPDSS SSASVPVAVT SHYHQDFSER AECRFFMNTG TCKYGDDCKY IHPKERMLQS  300
PPPNLLNPIL LPARPGQPAC GNFKAYGVCK FGANCKFDHS MPPNSYYNTG LTMVSLPNTT  360
TAYAPPVSTH LRISSPPSSS DSVTISNGKP AAETEKQDDS PAQPDKSDVE DSSPPNHSDS  420
TTLTNGKPDA ENPISETKKP DDNTAKPDSS EVQDTPENSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK31098.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881253.10.0zinc finger CCCH domain-containing protein 26
SwissprotO487720.0C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLA0A087GMJ60.0A0A087GMJ6_ARAAL; Uncharacterized protein
STRINGA0A087GMJ60.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.10.0zinc finger nuclease 2