PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK31189.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 154aa    MW: 17628.8 Da    PI: 5.0042
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK31189.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.63.4e-0639791055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                + R d++ ++++ L++l+ +      +K + a++L +A++YI+ Lq
  KFK31189.1 39 KERKDKVGERISALQQLVSPY-----GKTDTASVLLEAMQYIQFLQ 79
                67889999***********99.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.9E-102889IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.2522978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-123492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-43784IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.08E-63983No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MEYYRDSSEI MMENKRSVYS LEENNIKRHK SDHSSFSSKE RKDKVGERIS ALQQLVSPYG  60
KTDTASVLLE AMQYIQFLQE QVKVLSAPYL QTTDITTLEE LVEYSLRSRG LCLVPIEYTL  120
GVAQTNGADI WTPVKTPTSP TNFNLKYDDS SPFQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK31189.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410303.23e-85transcription factor bHLH153 isoform X2
SwissprotQ7XJU14e-83BH154_ARATH; Transcription factor bHLH154
TrEMBLA0A087GMT71e-110A0A087GMT7_ARAAL; Uncharacterized protein
STRINGA0A087GMT71e-111(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31730.12e-85bHLH family protein