PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK31692.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HSF
Protein Properties Length: 272aa    MW: 32107.8 Da    PI: 8.4624
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK31692.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.38e-36201122103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+i+ed+++++++sws+++nsf+v+++e fa  +Lp+ Fkh+nf+SFvRQLn+YgFkk+++e+         weF++k+F +g+++ll++ik
    KFK31692.1  20 FLTKTYNIVEDSSTNNMVSWSRDSNSFIVWEPEMFALIILPRCFKHNNFSSFVRQLNTYGFKKIDTER---------WEFANKYFMRGQRHLLKNIK 107
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
    KFK31692.1 108 RRKKS 112
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.2E-5116109IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.67E-3516109IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.5E-3616109IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.7E-3020109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-182043IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-185870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-187183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MENNLPSPLE GLKETGPTPF LTKTYNIVED SSTNNMVSWS RDSNSFIVWE PEMFALIILP  60
RCFKHNNFSS FVRQLNTYGF KKIDTERWEF ANKYFMRGQR HLLKNIKRRK KSTQTQQTQT  120
HSLEGCRIGL EGEIQGMRKE RVALVIELMR LRRKQETIKT YLHLIEEKLK ITEKKQEMMM  180
DFLLRTFKNP SFLQSIRKRK HQEIENQEQG QEMISSYVVQ DHELFTKVEP KEYGNGDELH  240
IASMLDQGHD NEGLWKGFVL SEEMCGLGEH VL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-221110917129Heat shock factor protein 1
5d5v_B2e-221110917129Heat shock factor protein 1
5d5v_D2e-221110917129Heat shock factor protein 1
5d8k_B2e-22201145110Heat shock factor protein 2
5d8l_B2e-22201145110Heat shock factor protein 2
5d8l_D2e-22201145110Heat shock factor protein 2
5d8l_F2e-22201145110Heat shock factor protein 2
5d8l_H2e-22201145110Heat shock factor protein 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102108LKNIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00541DAPTransfer from AT5G43840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK31692.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4470351e-122DQ447035.1 Arabidopsis thaliana clone pENTR221-At5g43840 heat shock transcription factor family protein (At5g43840) mRNA, complete cds.
GenBankDQ6533451e-122DQ653345.1 Arabidopsis thaliana clone 0000012923_0000009316 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002863630.11e-145heat stress transcription factor A-6a
SwissprotQ1PDN31e-135HFA6A_ARATH; Heat stress transcription factor A-6a
TrEMBLA0A087GP900.0A0A087GP90_ARAAL; Uncharacterized protein
STRINGA0A087GP900.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156831416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43840.11e-124heat shock transcription factor A6A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]