PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK31726.1
Common NameSPL2
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family SBP
Protein Properties Length: 430aa    MW: 47731.2 Da    PI: 8.6927
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK31726.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1291.7e-40177252277
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                 CqvegC+ dls+ak+yhr+h++Ce hsk p+v+vsg+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk++
  KFK31726.1 177 CQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPN 252
                 **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.2E-33172238IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.795174251IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.49E-38175254IPR004333Transcription factor, SBP-box
PfamPF031103.3E-31177250IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MECNAKPSLQ WEWDNLISFG TSSAEIPRKL RPMEWEIDGF DCTSLYSSSF AAVANGGGSG  60
SDLAQAFSKS SKSTSISSSS TEVRTHNFTS EAGESLPGEL GSSEEFAKGI DASPSLELSF  120
GSGDPVLGLK LGKRTYFEDF WEVENAKGSA LPVSLASSVS PVKRSKTIPQ RLQTPHCQVE  180
GCNLDLSSAK DYHRKHRICE NHSKFPKVVV SGVERRFCQQ CSRFHCLSEF DEKKRSCRRR  240
LSDHNARRRK PNPGRTFDGK QHMDFGWNRF ALVHPKSEEK FLWPSSNPTP SRGLILQPAK  300
TETSNKLFTK NCGFGLLDPK TKTSRTELFS KEKVIISSHM GTSQDLDGAL SLLSNSTSWA  360
SSDPPRRFSL DHHPTSNLQP PVADRSVSQL NSVSGYWQPD APAVGQTALH RNGVGQFNEN  420
YFSFNQFYNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-261772501184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232249KKRSCRRRLSDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK31726.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8159490.0KC815949.1 Arabis alpina SQUAMOSA promoter binding protein-like protein 2 (SPL2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481881.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010481882.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010481883.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010481884.10.0PREDICTED: squamosa promoter-binding-like protein 2
SwissprotQ9S8400.0SPL2_ARATH; Squamosa promoter-binding-like protein 2
TrEMBLS4WVY00.0S4WVY0_ARAAL; SQUAMOSA promoter binding protein-like protein 2
STRINGS4WVY00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65622644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.30.0squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Bergonzi S, et al.
    Mechanisms of age-dependent response to winter temperature in perennial flowering of Arabis alpina.
    Science, 2013. 340(6136): p. 1094-7
    [PMID:23723236]