PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK31728.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NF-YC
Protein Properties Length: 124aa    MW: 14230.6 Da    PI: 10.5664
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK31728.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC47.63.6e-159881997
       NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                 e+Pl r+kki+k d+d++++ +ea  l++ + elf+  l+ +s l + e+krr+++   + +av+r + + dfl+d  p
  KFK31728.1  9 PEFPLGRVKKIMKLDKDINKLNSEALFLVTYSTELFLRFLAEKSALVTMEKKRRSVNLDHLRTAVKRHQpTSDFLLDSLP 88
                589**************************************************************9976489*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008083.8E-171073IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471135.53E-171097IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.7E-191188IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MAEEENIRPE FPLGRVKKIM KLDKDINKLN SEALFLVTYS TELFLRFLAE KSALVTMEKK  60
RRSVNLDHLR TAVKRHQPTS DFLLDSLPIP AQTVKPAKTA PEKPPPIGTR RIDQFFNKGK  120
SQID
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK31728.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403274.22e-65nuclear transcription factor Y subunit gamma
TrEMBLA0A087GPC62e-84A0A087GPC6_ARAAL; Uncharacterized protein
STRINGA0A087GPC63e-85(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128602530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.11e-61nuclear factor Y, subunit C13