PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK31815.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ZF-HD
Protein Properties Length: 217aa    MW: 25181.4 Da    PI: 7.318
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK31815.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer66.55e-2153103460
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                   rY +C+kN+ as+G++a+DGCgEf++s      +++  CaACgC R+FHR e+ee+
   KFK31815.1  53 PRYGKCKKNQSASMGTTAYDGCGEFVAS------ISGEDCAACGCNRSFHREEEEEQ 103
                  69*************************9......6788**************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015665.0E-175499IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.3E-1554100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-105597IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152316.0665599IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.5E-18152216IPR009057Homeodomain-like
SuperFamilySSF466898.51E-10156216IPR009057Homeodomain-like
TIGRFAMsTIGR015657.6E-26159214IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEEINSKKEE NPKPKRRSKP ICRITSDHVH YPPTRRTKPT RPSHAPSPNL KAPRYGKCKK  60
NQSASMGTTA YDGCGEFVAS ISGEDCAACG CNRSFHREEE EEQSEESILE KCIRSGTIDE  120
SVLEMLEITS DQFRQIFCSP YGDKGEEDLV VEKEEERVKR LKTKFTVEQT EKMRCYAEKI  180
LWKVRPENRE EVDGFCVEIG VDRKRFMIWI NNHRDKN
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK31815.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865484.11e-79zinc-finger homeodomain protein 13
SwissprotQ9FMY74e-75ZHD13_ARATH; Zinc-finger homeodomain protein 13
TrEMBLA0A087GPL31e-159A0A087GPL3_ARAAL; Uncharacterized protein
STRINGA0A087GPL31e-160(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM158881113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42780.12e-63homeobox protein 27