PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK31824.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 231aa    MW: 26493.3 Da    PI: 10.1015
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK31824.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.33.6e-15132218193
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k ++ps+v+   +l lp  f+++   +  ++  +tl de+g+++e  +  rk++    l++GW +F+ a++L  gD +vF+l++ + f+ +
  KFK31824.1 132 FVKSMLPSHVSGGFWLGLPSYFCKSELRN--QDGVMTLIDEEGEEFETVYLARKTG----LSGGWMGFAIAHNLAYGDALVFQLVRPNAFKIY 218
                 89*********************777434..4458***************656665....************************987888444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.59E-20126222IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-16128221IPR015300DNA-binding pseudobarrel domain
CDDcd100171.56E-21130221No hitNo description
PfamPF023621.6E-12132218IPR003340B3 DNA binding domain
PROSITE profilePS5086311.42132223IPR003340B3 DNA binding domain
SMARTSM010195.3E-19132223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MVVAKQSPYE EFRLQRVEEN KKRMEALNLP RLSRNLNSKI SIKTSPMKKS PLRTREKQLV  60
IVRRSSRISN SSSSTPVYKE IDVERVRIPR RVCSSRRRDF SNRVYVSEEC REEAISRAEK  120
LQDDLGTDFP IFVKSMLPSH VSGGFWLGLP SYFCKSELRN QDGVMTLIDE EGEEFETVYL  180
ARKTGLSGGW MGFAIAHNLA YGDALVFQLV RPNAFKIYIT RVGSSEESSK I
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK31824.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076471e-41AB007647.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJB21.
GenBankCP0026881e-41CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009123694.21e-112PREDICTED: B3 domain-containing protein At5g42700
RefseqXP_013659682.11e-112B3 domain-containing protein At5g42700-like
SwissprotQ9FMZ41e-100Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A087GPM21e-168A0A087GPM2_ARAAL; Uncharacterized protein
STRINGA0A087GPM21e-169(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.18e-88B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]