PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK31904.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 261aa    MW: 29031.4 Da    PI: 6.8036
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK31904.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-1994143255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+AeIrdps    r  r +lg++ taeeAa  +++a+ +l+g
  KFK31904.1  94 KYRGVRQRP-WGKWAAEIRDPS----RrVRLWLGTYATAEEAAIVYDNAAIQLRG 143
                 8********.**********84....34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.1E-3093151IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2194152IPR016177DNA-binding domain
SMARTSM003805.9E-3794157IPR001471AP2/ERF domain
PfamPF008471.6E-1294143IPR001471AP2/ERF domain
CDDcd000181.82E-3094150No hitNo description
PROSITE profilePS5103223.49994151IPR001471AP2/ERF domain
PRINTSPR003674.1E-1095106IPR001471AP2/ERF domain
PRINTSPR003674.1E-10117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
METDKSRMKV TEHKIKSRIV SRIKTQPRMI RITVTDPYAT ESSSDEEEEE ISRKRRRVKK  60
FVNEVVLESP EKKNKRRKTT TTTKKVETVT AARKYRGVRQ RPWGKWAAEI RDPSRRVRLW  120
LGTYATAEEA AIVYDNAAIQ LRGPNALTNF STATSSGAGE CLRSPVSVLQ SPFKEELSGV  180
STAETTESGT LTDYSFLDDD VFGFPAAMSD CYGGDLFGDD VFGDMSFGYG SGSGSGLSSW  240
HVEDHFQDIG DLFGSDPLLA V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2193157469ATERF1
3gcc_A6e-2193157469ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15256RKRRR
25259RKRRRVKK
35357KRRRV
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK31904.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0498767e-56AL049876.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T22B4 (ESSA project).
GenBankAL1615317e-56AL161531.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 31.
GenBankAY5608497e-56AY560849.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At4g11140) mRNA, complete cds.
GenBankBT0251767e-56BT025176.1 Arabidopsis thaliana At4g11140 mRNA, complete cds.
GenBankCP0026877e-56CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankF2P37e-56AF080120.1 Arabidopsis thaliana BAC F2P3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396951.11e-105ethylene-responsive transcription factor CRF1
SwissprotO825035e-89CRF1_ARATH; Ethylene-responsive transcription factor CRF1
TrEMBLA0A087GPV20.0A0A087GPV2_ARAAL; Uncharacterized protein
STRINGA0A087GPV20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.17e-65cytokinin response factor 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]