PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK31930.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HSF
Protein Properties Length: 378aa    MW: 39891.2 Da    PI: 4.3837
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK31930.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1154.9e-36561482103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+ ++elisw+e+g+sf+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ Fk+g+k ll++i+
    KFK31930.1  56 FLTKTYQLVDDPVYDELISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFKRGEKILLRDIQ 143
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k +
    KFK31930.1 144 RRKIS 148
                   **865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.7E-5952145IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.6E-3853145IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.36E-3453145IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.9E-3256145IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-205679IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-2094106IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434095119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-20107119IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1701.3E-4225252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MPGEQTGETP TVVAGVGGGG GGVSAGNSGG SSGCGAGGGG GGGGGGDSQR SIPTPFLTKT  60
YQLVDDPVYD ELISWNEDGT SFIVWRPAEF ARDLLPKYFK HNNFSSFVRQ LNTYGFRKVV  120
PDRWEFSNDC FKRGEKILLR DIQRRKISQP AMAAAAAAAA AAVAASAVTV AAAPVVVHAV  180
SPSNSGEEQV ISSNSSPAAA AAATGGGAAV GVALQRTTSC TTAPELVEEN ERLRKENVQL  240
SQELTKLKGL YANIYTLMAN FTSGQAECAN LLPEGKPLDL LPMRQGTSEE AMAMDSRIEE  300
GIGLKLDEDL TPRLFGVSIG FKRARREEEL GGAEDDDDDK RDAVMVTQED EQGSDVKSEP  360
MEENNSDDHD GPWLELGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-275614820123Heat shock factor protein 1
5d5u_B3e-27301451129Heat shock factor protein 1
5d5v_B3e-27301451129Heat shock factor protein 1
5d5v_D3e-27301451129Heat shock factor protein 1
5hdg_A1e-275614510110Heat shock factor protein 1
5hdn_A1e-275614510110Heat shock factor protein 1
5hdn_B1e-275614510110Heat shock factor protein 1
5hdn_C1e-275614510110Heat shock factor protein 1
5hdn_D1e-275614510110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK31930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396868.10.0heat stress transcription factor B-2b
RefseqXP_024009823.10.0heat stress transcription factor B-2b
SwissprotQ9T0D31e-166HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A087GPX80.0A0A087GPX8_ARAAL; Uncharacterized protein
STRINGA0A087GPX80.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-150HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]