PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK31962.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 360aa    MW: 41411.5 Da    PI: 8.7661
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK31962.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013113136123
                 EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                 y C+ C+++F +++ L +H +  H
  KFK31962.1 113 YFCGVCDRRFYTNEKLINHFKQiH 136
                 78*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.2E-532114IPR029060PIN domain-like
SuperFamilySSF576676.94E-5112138No hitNo description
PROSITE profilePS5015711.136113141IPR007087Zinc finger, C2H2
PROSITE patternPS000280115136IPR007087Zinc finger, C2H2
CDDcd061673.11E-13159265No hitNo description
PfamPF019362.3E-7183265IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10101.2E-5198262IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MFPKLLQTIW KPKPLTTPLY SIKRFSSINP KPQIRVGIFW DLDNKPPASF PPYDAAVKLR  60
SAASSFGFVK LMVAYANRHA FSYVPLEIRE ERKERKLLNQ LENKGLVRSS EPYFCGVCDR  120
RFYTNEKLIN HFKQIHESEN QKRMRQIESS KGHQRVRLVA KYSMKIEKYK RAVRNVLTPK  180
EGYGLADELK RAGFLVKMVS DKPEAADRAL KEHMVDVMDK REVDCVVLVS DDSGFAEVLW  240
EAKERCLRTV VIGDLNEGAL KRVADVGYSW KEVVMGKAKK EVEKVVGKWK DRDVLKKLEW  300
SYDPVLEKEK SSCGVWDYEF GDDDETKNGT EVESVEIGDG GDWWEIGNDD DGVGCSRPCR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK31962.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020877699.10.0uncharacterized protein LOC9308716
TrEMBLA0A087GQ100.0A0A087GQ10_ARAAL; Uncharacterized protein
STRINGA0A087GQ100.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.10.0C2H2 family protein