PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32009.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family DBB
Protein Properties Length: 156aa    MW: 17251.4 Da    PI: 4.8518
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32009.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box192.8e-06445539
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                 C+ +e+ e++  C +++  lC+ C  ++H+        H+v
  KFK32009.1  4 QCEVCEKAEAEVLCCSDEAVLCKPCDIKIHEAnklfqrhHRV 45
                7*****************************778888885554 PP
2zf-B_box26.21.6e-085692438
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Ht 38
                + C+ ++e +  +fC +++ llC++C  ++H     H+
  KFK32009.1 56 PLCDICQERKGYFFCLEDRALLCNECDGAIH-AcntHQ 92
                78******99********************9.324476 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.84147IPR000315B-box-type zinc finger
CDDcd000217.98E-5347No hitNo description
SMARTSM003362.2E-6447IPR000315B-box-type zinc finger
PROSITE profilePS501198.9875396IPR000315B-box-type zinc finger
SMARTSM003364.3E-105396IPR000315B-box-type zinc finger
PfamPF006434.8E-75693IPR000315B-box-type zinc finger
CDDcd000211.68E-75696No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MKIQCEVCEK AEAEVLCCSD EAVLCKPCDI KIHEANKLFQ RHHRVDLQKS ALATSPLCDI  60
CQERKGYFFC LEDRALLCNE CDGAIHACNT HQRFLLSGVQ ASDQSLIENS GCSTSFSSET  120
YQFQSKASLN SQNSREETEA GNLGEADKIS PVILSP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in seedling photomorphogenesis. {ECO:0000250|UniProtKB:Q9SJU5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK32009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533411e-130AK353341.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-35-E09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013654798.12e-89B-box zinc finger protein 23-like
SwissprotO826173e-87BBX23_ARATH; B-box zinc finger protein 23
TrEMBLA0A087GQ571e-110A0A087GQ57_ARAAL; Uncharacterized protein
STRINGA0A087GQ571e-111(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125022430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10240.11e-89DBB family protein
Publications ? help Back to Top
  1. Zhang X, et al.
    A PIF1/PIF3-HY5-BBX23 Transcription Factor Cascade Affects Photomorphogenesis.
    Plant Physiol., 2017. 174(4): p. 2487-2500
    [PMID:28687557]