PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32147.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GRAS
Protein Properties Length: 349aa    MW: 38658.5 Da    PI: 4.9238
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32147.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS187.21.1e-571143241207
        GRAS   1 lvelLlecAeavss.gdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                 lv+lL+++Aea ++ +  el++ +Larl+ l+s  + ++m+Rlaa+ft++L++ l +  ++  ++ p ++ + +++s++++a+++++++sP+++f++lt
  KFK32147.1 114 LVHLLVAAAEASTDvKARELTRVILARLKGLVSTCDrTNMERLAAHFTNGLSKLLEG-PNQQQRSSPQQPRDVYDQSDVISAFEMLQNMSPYVNFGYLT 211
                 689*********99455669***********6665559******************9.33333444555566678************************ PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                 a qaI eav+ e+rvHi+D+di++G+QW++L+qaL s++  +++ +lRiT+++++++g  s  +++e g+rL+ fAe++g pf+++     + ++++++
  KFK32147.1 212 ATQAIIEAVKYERRVHIVDYDITEGAQWASLMQALVSKNtgSSTQHLRITALSRATNGkkSVASVQEAGRRLNAFAESIGQPFSYHH-CKLDSDTFNPS 309
                 ***************************************666677*********999999999***********************9.6889******* PP

        GRAS 193 eLrvkpgEalaVnlv 207
                 +L++ +gEa+++nlv
  KFK32147.1 310 SLKLVRGEAVVINLV 324
                 *************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.78988349IPR005202Transcription factor GRAS
PfamPF035144.0E-55114324IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MTMDYPYDDL LDLFFSDEPA TAGSTTAAPT IFSCEERGNS LNDLSLNMDW DCDFRDLIES  60
MMDDEGAMIE SPPRLSCHNG VEEACNSTST GLSMAYGVNV EEEPKLDESK GLRLVHLLVA  120
AAEASTDVKA RELTRVILAR LKGLVSTCDR TNMERLAAHF TNGLSKLLEG PNQQQRSSPQ  180
QPRDVYDQSD VISAFEMLQN MSPYVNFGYL TATQAIIEAV KYERRVHIVD YDITEGAQWA  240
SLMQALVSKN TGSSTQHLRI TALSRATNGK KSVASVQEAG RRLNAFAESI GQPFSYHHCK  300
LDSDTFNPSS LKLVRGEAVV INLVRGKWVQ TRGHELRQPL PSKAPFELV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-2015432441208GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK32147.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397321.21e-164scarecrow-like protein 26
SwissprotQ9SUF51e-152SCL26_ARATH; Scarecrow-like protein 26
TrEMBLA0A087GQJ50.0A0A087GQJ5_ARAAL; Uncharacterized protein
STRINGA0A087GQJ50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99142736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-145GRAS family protein