PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32172.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GeBP
Protein Properties Length: 345aa    MW: 38800 Da    PI: 9.4515
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32172.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57353.66.3e-17142224297
      DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                 ++qr+w+e+Dei+lL  +i+    +gk+  +++++f++ v++  sf  s+sq+v+K+  LK K+++k+ k         +k +d k+++l+++iWg
  KFK32172.1 142 NPQRVWTENDEITLLDSMIKL---NGKN--HNLTGFFDSVRNDFSFVPSNSQFVKKMSALKIKYQNKKYKG--------DKVNDIKSMGLAEQIWG 224
                 68******************9...4533..69**********************************99993........34566677777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.6E-13144224IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAKKKKIEDP EMQISSDHEE VESSSEEDMQ KSGSESESEE GSESEDDMQK PVPDNFSGKP  60
KIKEVRKVNT PVVKPAVSLS EETPSKKPVA ITTKNKGVLV AASKSASKRP GMSPETSSPM  120
KRARNESGDV DIITADDAKK PNPQRVWTEN DEITLLDSMI KLNGKNHNLT GFFDSVRNDF  180
SFVPSNSQFV KKMSALKIKY QNKKYKGDKV NDIKSMGLAE QIWGPGGFLY ESTNSLLKSN  240
IGKSRKSEKK KVQSSKPVEE DVLVRARGDM GVKRDWFEAS FFVPFIVSLG LDEDYVKQRW  300
SSVSMEDKKE LEEAYKLWHD KYVVENARIK TMLLHKATSL IFKSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK32172.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A087GQM00.0A0A087GQM0_ARAAL; Uncharacterized protein
STRINGA0A087GQM00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00250.16e-33DNA-binding storekeeper protein-related transcriptional regulator