PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK32292.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

LBD

Protein Properties

Length: 229aa MW: 25275.8 Da PI: 4.8782

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK32292.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.7	8.5e-43	51	148	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+la+++ KFK32292.1 51 PCAACKILRRRCAEKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQ 148 7*********************************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.2	50	151	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-42	51	148	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MLKMEINGGI SAATPTASAV VLPATPVASP SPKSSPPQPL SPPQPSVVLS PCAACKILRR 60 RCAEKCVLAP YFPPTDPAKF TIAHRVFGAS NIIKFLQELP ESQRTDAVNS MVYEAGARMR 120 DPVYGCAGAI YHLQRQVSEL QAQLAKTQVD LVSMQLQRSN LLELIYKMEQ PKLSAQEQGQ 180 QNMCFECSFE SSDDFISSPE EERNDLGFLE DNNNINNNSS ISWWDPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-40	50	152	10	112	LOB family transfactor Ramosa2.1
5ly0_B	9e-40	50	152	10	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK32292.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009140905.1	1e-128	PREDICTED: LOB domain-containing protein 11
Swissprot	Q9SK08	1e-124	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A087GQZ0	1e-169	A0A087GQZ0_ARAAL; Uncharacterized protein
STRING	A0A087GQZ0	1e-170	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	1e-118	LOB domain-containing protein 11